Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq3 524 8e-144 seq5 372 3e-98 seq6538 96.9 4e-15 >seq3 Length=64984695 Score = 524 bits (580), Expect = 8e-144 Identities = 711/990 (72%), Gaps = 6/990 (1%) Strand=Plus/Minus Query 163917 GATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGCA 163976 || ||||| || ||||| ||||||||||| || | || ||||| ||| ||| | || Sbjct 33666103 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 33666044 Query 163977 ATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGCG 164036 | || || ||| | || |||||||| ||||| || ||||| || || || | || Sbjct 33666043 TTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGC- 33665985 Query 164037 TCTAGTTACCTT---GAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGAT 164093 ||||| | | || ||| ||||| | || || || || || || |||||| || Sbjct 33665984 --TAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAAT 33665927 Query 164094 GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAGG 164153 | | | |||||| | | |||| ||||||||||| | || || || || | | | Sbjct 33665926 AGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGT 33665867 Query 164154 TGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATC 164213 ||||| ||| | || || || ||||||||||| || |||||| ||||||| | || Sbjct 33665866 TGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCACCACGGTGCTTTCGCATTAATA 33665807 Query 164214 GGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCT 164273 ||||| ||| | || || |||||| |||| || ||| | || || || ||||| Sbjct 33665806 GGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCA 33665747 Query 164274 ATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGG 164333 || || ||||||||||| |||||||| ||||| || || || || || || || || Sbjct 33665746 ATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGT 33665687 Query 164334 CAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTG 164393 |||||| ||||||||||||| || ||||| || ||||| || || ||||| || | Sbjct 33665686 CAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTC 33665627 Query 164394 TTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGC 164453 || ||||||| || ||||| |||||| | ||||| || ||||||||||| || || || Sbjct 33665626 TTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCTGGT 33665567 Query 164454 ATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTT 164513 | || || | ||||| | || ||||||||||||||||| ||||| |||||||| ||| Sbjct 33665566 GTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTT 33665507 Query 164514 GAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACT 164573 ||||||||||| ||||||| ||| || || | || ||||||| ||||| ||| Sbjct 33665506 GAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACT 33665447 Query 164574 TACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAAT 164633 || || |||||||| || |||||||| ||||| || || ||||| ||||||| |||| Sbjct 33665446 TATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAAT 33665387 Query 164634 AAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCT 164693 || |||||||| || ||||||||| | ||||| || || | || | |||| ||| || Sbjct 33665386 AAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCT 33665327 Query 164694 ATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATT 164753 |||| | ||||||| || | || || ||||| ||||| || || || ||||| || Sbjct 33665326 CTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATC 33665267 Query 164754 AGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAA 164813 | ||||| || ||||| ||||||||||| |||||||| || || || || | || ||| Sbjct 33665266 CGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAA 33665207 Query 164814 GGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGAG 164873 || | || || |||||||| | ||| ||||| || ||| || |||| || ||| Sbjct 33665206 GGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAG 33665147 Query 164874 GAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 || ||||| || | || ||||| || ||| Sbjct 33665146 GAGGTTCTACCACGTGGAAACGCTCTTTAA 33665117 >seq5 Length=46902585 Score = 372 bits (412), Expect = 3e-98 Identities = 430/579 (74%), Gaps = 0/579 (0%) Strand=Plus/Plus Query 164325 CCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGA 164384 || || || |||||| ||||||||||||| || ||||| || ||||| || || || Sbjct 22000794 CCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGA 22000853 Query 164385 TTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGT 164444 ||| || | || ||||||| || ||||| |||||| | ||||| || ||||||||||| Sbjct 22000854 TTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGA 22000913 Query 164445 GTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAAT 164504 || || || | || || | ||||| | |||||||||||||||||||| ||||| ||| Sbjct 22000914 GTCGCTGGTGTACTGGGCGCGGCTCTGTTATGTGCTATTCATGGTGCTACTGTAGAAAAT 22000973 Query 164505 ACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAG 164564 ||||| |||||||||||||| ||||||| ||| || || | || ||||||| Sbjct 22000974 ACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCC 22001033 Query 164565 GAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCT 164624 ||||| ||||| || |||||||| || |||||||| ||||| || || ||||| ||||| Sbjct 22001034 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCT 22001093 Query 164625 TTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGG 164684 || |||||| |||||||| || ||||||||| | ||||| || || | || | ||| Sbjct 22001094 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGG 22001153 Query 164685 ACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCT 164744 | ||| || |||| | ||||||| || | || || ||||| ||||| || || || Sbjct 22001154 ATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCC 22001213 Query 164745 CAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTC 164804 ||||| || | ||||| || ||||| ||||||||||| |||||||| || || || || Sbjct 22001214 CAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTT 22001273 Query 164805 CTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTA 164864 | || ||||| | || || |||||||| | ||| ||||| || ||| || || Sbjct 22001274 TTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATA 22001333 Query 164865 TTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 || || ||||| ||||| || | || ||||| || ||| Sbjct 22001334 TTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 22001372 >seq6538 Length=695 Score = 96.9 bits (106), Expect = 4e-15 Identities = 187/275 (68%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 163917 GATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGCA 163976 || ||||| || ||||| ||||||||||| || | || ||||| ||| || || Sbjct 418 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCAATTCCGCT 477 Query 163977 ATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGCG 164036 | || || ||| | || |||||||| ||||| || ||||| || || || | || Sbjct 478 TTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGC- 536 Query 164037 TCTAGTTACCTT---GAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGAT 164093 ||||| | | || ||| ||||| | || || || || || || |||||| | Sbjct 537 --TAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAAA 594 Query 164094 GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAGG 164153 | | | |||| | | | |||| ||||||||||| | || |||||||||| | | Sbjct 595 AGTTTAGCGCATTTTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGGGACTTCACTCGT 654 Query 164154 TGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGC 164188 ||||| ||| | || || || ||||||||||| || Sbjct 655 TGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGC 689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559098074242400