Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq40249 230 5e-58 seq1 114 3e-23 seq22411 111 3e-22 >seq40249 Length=153482 Score = 230 bits (254), Expect = 5e-58 Identities = 253/329 (77%), Gaps = 21/329 (6%) Strand=Plus/Minus Query 10 CCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAA 69 ||| || |||||| | | |||||||||||| || |||||||||||||||||| || Sbjct 100477 CCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAA 100420 Query 70 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGA 129 |||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| Sbjct 100419 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 100360 Query 130 TCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC 189 |||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||||||||||| Sbjct 100359 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 100300 Query 190 TAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGT 248 ||||| ||| | || | | || || ||| || ||| |||| | | | Sbjct 100299 TAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCT 100253 Query 249 AGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGAT 306 | | || | ||||||||| |||||||| ||| | ||| || ||| ||||| | Sbjct 100252 CAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGT 100196 Query 307 TCCTAGGCATTACTCACCCGTCCGCCGCT 335 || || || ||||||||||||||||| || Sbjct 100195 TCTTACGCGTTACTCACCCGTCCGCCACT 100167 Score = 230 bits (254), Expect = 5e-58 Identities = 253/329 (77%), Gaps = 21/329 (6%) Strand=Plus/Plus Query 10 CCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAA 69 ||| || |||||| | | |||||||||||| || |||||||||||||||||| || Sbjct 136287 CCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAA 136344 Query 70 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGA 129 |||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| Sbjct 136345 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 136404 Query 130 TCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC 189 |||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||||||||||| Sbjct 136405 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 136464 Query 190 TAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGT 248 ||||| ||| | || | | || || ||| || ||| |||| | | | Sbjct 136465 TAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCT 136511 Query 249 AGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGAT 306 | | || | ||||||||| |||||||| ||| | ||| || ||| ||||| | Sbjct 136512 CAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGT 136568 Query 307 TCCTAGGCATTACTCACCCGTCCGCCGCT 335 || || || ||||||||||||||||| || Sbjct 136569 TCTTACGCGTTACTCACCCGTCCGCCACT 136597 >seq1 Length=28635137 Score = 114 bits (126), Expect = 3e-23 Identities = 110/136 (81%), Gaps = 5/136 (4%) Strand=Plus/Minus Query 2 TTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCC 59 ||||| | | ||| | ||||||| ||| ||||| |||| ||||||||||||| || | Sbjct 13789501 TTTACGAGCGGAATTGCCCTTCTT-CACTCACGCAATATTG-CTGGATCAGGCTTGCGTC 13789444 Query 60 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 119 |||||||||| |||||||||||||||| | || |||||| || | |||||||||| || Sbjct 13789443 CATTGTCCAAGATTCCCCACTGCTGCC-ACTGTGGGAGTCCGGGCTGTGTCTCAGTCCCG 13789385 Query 120 GTGTGACTGATCATCC 135 ||||| |||||| ||| Sbjct 13789384 GTGTGGCTGATCGTCC 13789369 >seq22411 Length=100 Score = 111 bits (122), Expect = 3e-22 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 41 GCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 100 |||||||||||||| |||||||| ||||| |||||||| ||||||| ||||| |||||| Sbjct 9 GCTGGATCAGGCTTGCGCCCATTCTCCAAGATTCCCCAATGCTGCCCCCCGTGGGAGTCC 68 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATC 131 | |||||||||||| || ||||| |||||| Sbjct 69 AGGCCGTGTCTCAGTCCCGGTGTGGCTGATC 99 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071568530720