Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq40249 167 4e-39 seq30095 113 7e-23 seq10 95.1 2e-17 >seq40249 Length=153482 Score = 167 bits (184), Expect = 4e-39 Identities = 208/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 100800 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 100741 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | ||||||| Sbjct 100740 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCAAG 100681 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 100680 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 100621 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 100620 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 100561 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 100560 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 100516 Score = 167 bits (184), Expect = 4e-39 Identities = 208/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 135964 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 136023 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | ||||||| Sbjct 136024 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCAAG 136083 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 136084 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 136143 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 136144 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 136203 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 136204 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 136248 >seq30095 Length=101 Score = 113 bits (124), Expect = 7e-23 Identities = 79/90 (88%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 201 CTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCA 260 |||||| |||| ||| |||| ||||||| || |||||||||||||||||||||||||| Sbjct 3 CTTTACGCCCAGTAATTCCGATTAACGCTCGCACCCTACGTATTACCGCGGCTGCTGGCA 62 Query 261 CGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||| |||||||| ||||||| Sbjct 63 CGTAGTTAGCCGGTGCTTATTCTTCAGGTA 92 >seq10 Length=17599535 Score = 95.1 bits (104), Expect = 2e-17 Identities = 186/273 (68%), Gaps = 8/273 (3%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| || || |||||| | | |||||| | || || |||||||| | Sbjct 10541182 GCTTTCGTCTCTTAGTGTCAGTATCGGCCCAGCAGAGTGTTTTTACCGTTGGTGTTCTTT 10541123 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||| | ||| |||| | ||||||| | | ||||||| Sbjct 10541122 CCGATCTCTACGCATTTCACCGTTCCACCGAAAATTTCCTCTGCCTCTACCGTACTCAAG 10541063 Query 126 AAAAACAGTTTCAAATGC---AGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTG 182 ||||| ||| | | || |||||||||| | ||| || | ||||| Sbjct 10541062 CTTGGTGGTTTCCCCTGCCTGTGTCCAT-GGTTGAGCCCTGGGATTTGACGGCGGACTTA 10541004 Query 183 CCTTCCCGCCTACACGCCCTTTACACCCAATAAA----TCCGGATAACGCTTGCCACCTA 238 || |||||| | ||||||||||||| || ||| ||||||| |||| |||| Sbjct 10541003 AGAAGCCACCTACAAACGCTTTACACCCAATCAATCATTCCAGATAACGGTTGCATCCTA 10540944 Query 239 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCC 271 |||||||| | ||||| ||||| |||||||| Sbjct 10540943 TGTATTACCACAGCTGCCGGCACAGAGTTAGCC 10540911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828476840779