Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq6075 168 7e-40 seq6 131 2e-28 seq9604 127 2e-27 seq7 127 2e-27 seq5 127 2e-27 seq4 127 2e-27 seq30069 102 8e-20 seq8 84.2 2e-14 >seq6075 Length=222 Score = 168 bits (186), Expect = 7e-40 Identities = 99/103 (96%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 120 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGAATA 179 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG 103 ||||| |||||||||||||||||||||||| |||||||||||| Sbjct 180 CATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTG 222 >seq6 Length=26286742 Score = 131 bits (144), Expect = 2e-28 Identities = 138/178 (78%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||||| Sbjct 20162376 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGG 20162317 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | |||| ||||| ||| || | ||| || |||||||| | Sbjct 20162316 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTA 20162259 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 20162258 ACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 20162201 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 20045517 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 20045458 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 20045457 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 20045400 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 20045399 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 20045340 Query 190 T 190 | Sbjct 20045339 T 20045339 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 20107781 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 20107722 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 20107721 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 20107664 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 20107663 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 20107604 Query 190 T 190 | Sbjct 20107603 T 20107603 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 20116861 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 20116802 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 20116801 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 20116744 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 20116743 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 20116684 Query 190 T 190 | Sbjct 20116683 T 20116683 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 20139228 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 20139287 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 20139288 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 20139345 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 20139346 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 20139405 Query 190 T 190 | Sbjct 20139406 T 20139406 >seq9604 Length=360852 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 74707 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 74648 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 74647 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 74590 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 74589 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 74530 Query 190 T 190 | Sbjct 74529 T 74529 >seq7 Length=22597724 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 9825812 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 9825753 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 9825752 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 9825695 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 9825694 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 9825635 Query 190 T 190 | Sbjct 9825634 T 9825634 >seq5 Length=23960834 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 13121731 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 13121672 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 13121671 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 13121614 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 13121613 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 13121554 Query 190 T 190 | Sbjct 13121553 T 13121553 Score = 87.8 bits (96), Expect = 2e-15 Identities = 128/177 (72%), Gaps = 3/177 (2%) Strand=Plus/Minus Query 15 TACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGAA 73 ||||||||| |||||| || | |||||||| | | ||| | |||||||| ||||| | Sbjct 16577891 TACTTTGAAGAAATTATAGTGCTCAAAGCAATCTTACGCTTTGTATACATTAGCATGGGA 16577832 Query 74 TAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAA 133 ||||| ||| || | | | ||||| ||| || | | ||| | |||||||| || Sbjct 16577831 TAATACCATATGATTTT-GATCCTATTGTGTTGGCCTTTGGGATCAGA-GTAATGATTAA 16577774 Query 134 TACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | |||||| ||||| | |||| || |||| ||||||| ||||||||||||| Sbjct 16577773 CAGGGATAGCCGGGGACATTCATATTTCATAGTCAGAGGTGAATTTCTTGGATTTAT 16577717 >seq4 Length=18984343 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 577342 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 577401 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 577402 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 577459 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 577460 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 577519 Query 190 T 190 | Sbjct 577520 T 577520 >seq30069 Length=141 Score = 102 bits (112), Expect = 8e-20 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| |||| |||||||| ||||||||||||||||| ||||||||||| Sbjct 109 CCGTAATGATTAATAGGGATGGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 50 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 49 TTGGATTTATT 39 >seq8 Length=21613650 Score = 84.2 bits (92), Expect = 2e-14 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | |||||| | || | ||||| ||| || | ||| Sbjct 10445824 ATACATTAGCATGGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGAT 10445882 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||| || | ||| ||||||||| | ||||| || |||| |||||||| Sbjct 10445883 CGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAA 10445941 Query 178 TTCTTGGATTTAT 190 ||||||||||||| Sbjct 10445942 TTCTTGGATTTAT 10445954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511800364960