Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq40249 277 4e-72 seq10 134 3e-29 seq30095 122 2e-25 seq15694 118 3e-24 >seq40249 Length=153482 Score = 277 bits (306), Expect = 4e-72 Identities = 306/405 (76%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 100520 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 100579 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 100580 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 100639 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 100640 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTTGAGTACGGTAGGGGCA 100699 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 100700 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 100759 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 100760 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 100819 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 100820 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 100878 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 100879 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 100923 Score = 277 bits (306), Expect = 4e-72 Identities = 306/405 (76%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 136244 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 136185 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 136184 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 136125 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 136124 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTTGAGTACGGTAGGGGCA 136065 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 136064 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 136005 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 136004 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 135945 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 135944 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 135886 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 135885 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 135841 >seq10 Length=17599535 Score = 134 bits (148), Expect = 3e-29 Identities = 221/316 (70%), Gaps = 6/316 (2%) Strand=Plus/Plus Query 20 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTAC 79 |||||||| ||||| ||||| | |||||||| |||| || | ||||||| ||||| | Sbjct 10540911 GGCTAACTCTGTGCCGGCAGCTGTGGTAATACATAGGATGCAACCGTTATCTGGAATGAT 10540970 Query 80 TG----GGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTC 135 || || |||||| || |||||||| |||||||||| | || ||| | | ||||| Sbjct 10540971 TGATTGGGTGTAAAGCGTTTGTAGGTGGCTTCTTAAGTCCGCCGTCAAATCCCAGGGCTC 10541030 Query 136 AACCCCGGG-ACTG-CTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATT 193 |||| || || | | ||||| | ||| |||| | | || |||| | |||| Sbjct 10541031 AACCATGGACACAGGCAGGGGAAACCACCAAGCTTGAGTACGGTAGAGGCAGAGGAAATT 10541090 Query 194 CCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTG 253 ||| | |||||||||||||||| || | | |||||||| || || | || Sbjct 10541091 TTCGGTGGAACGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGTAAAAACACTCTG 10541150 Query 254 CTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCT 313 |||| | | ||||||||| || ||||||| ||| ||| || ||||||||||| | Sbjct 10541151 CTGGGCCGATACTGACACTAAGAGACGAAAGCTAGGGAAGCGAATGAGATTAGATACCAT 10541210 Query 314 GGTAGTCCACGCCGTA 329 |||||| |||||| Sbjct 10541211 ACTAGTCCTAGCCGTA 10541226 >seq30095 Length=101 Score = 122 bits (134), Expect = 2e-25 Identities = 81/90 (90%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||| ||| || |||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 92 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 33 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAG 90 ||||||| |||||||||||||||||||| Sbjct 32 GAGCGTTAATCGGAATTACTGGGCGTAAAG 3 >seq15694 Length=103 Score = 118 bits (130), Expect = 3e-24 Identities = 90/104 (87%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 228 GGAACACCAGTGGCGAAGGCGGCTTGCTGGAC-TGTAACTGACACTGAGGCTCGAAAGCG 286 |||||||| |||||||||| |||||| |||| ||||| || | || |||||||| Sbjct 1 GGAACACCGATGGCGAAGGCAATCCCCTGGACCTGTA-CTGACGCTCATGCACGAAAGCG 59 Query 287 TGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAA 330 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 TGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAA 103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202715724032