Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq40249 132 9e-29 seq31131 127 4e-27 >seq40249 Length=153482 Score = 132 bits (146), Expect = 9e-29 Identities = 178/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 103788 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 103847 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| |||| Sbjct 103848 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTTAACCT-----TTTGA-- 103899 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 103900 -ACTGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 103957 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 103958 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 104017 Query 249 CCT 251 ||| Sbjct 104018 CCT 104020 Score = 132 bits (146), Expect = 9e-29 Identities = 178/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 132976 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 132917 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| |||| Sbjct 132916 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTTAACCT-----TTTGA-- 132865 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 132864 -ACTGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 132807 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 132806 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 132747 Query 249 CCT 251 ||| Sbjct 132746 CCT 132744 >seq31131 Length=838 Score = 127 bits (140), Expect = 4e-27 Identities = 176/243 (72%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| ||||| |||| Sbjct 94 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAAAGCTTCGGG 153 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| || ||| || |||| ||| Sbjct 154 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCT-----TTTAA-- 205 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| | | |||| || ||| ||||||||||||||||| ||| Sbjct 206 -ACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 264 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 265 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 324 Query 249 CCT 251 ||| Sbjct 325 CCT 327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918030353184