Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6 172 4e-38 seq2 158 1e-33 >seq6 Length=26286742 Score = 172 bits (190), Expect = 4e-38 Identities = 571/874 (65%), Gaps = 18/874 (2%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| | || | | || ||| |||||||| ||||| || || || |||| Sbjct 22599085 TGTTCCCGATCCACTAACCGCAGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCTTTCT 22599144 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTT-ATCGAGC 61182 |||| | || || |||||| | || |||||| ||||||||| | | | ||| | Sbjct 22599145 GGACCGCCGAAGAAGTCGATCTCTCGCAAGACACTCGCGACTGGGAGAATCTCAACGA-C 22599203 Query 61183 GGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTC 61242 || || | || ||||| ||||| || | || ||||| ||||| || ||||| ||||| Sbjct 22599204 GGAGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTT 22599263 Query 61243 AATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 |||||| | || ||| | || |||||||| || ||||||||| ||| Sbjct 22599264 TTAGAGAATCTCGCCTCCCGGTTCATGTCCGACGTGCAAGTCTCCGAGGCGCGTGCCTTC 22599323 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 ||||| |||||||| || || |||||| ||||||| ||||||||||| | || |||| Sbjct 22599324 TACGGGTTCCAGATCGCGATTGAGAATATCCACTCAGAGATGTACAGCCTCCTGCTCGAC 22599383 Query 61363 ACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACC- 61421 |||||||||| ||| || | || | | ||| || || || || || || Sbjct 22599384 ACGTACATCAAGGACAACAAAGAGAGGGACCACCTCTTCCGCGCGATTGAAACCATCCCT 22599443 Query 61422 GGCG--GTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479 ||| | ||| ||| || | |||||| | || |||||| | | | | || Sbjct 22599444 TGCGTCGCGAA---GAAGGCCCAATGGGCCATGAAGTGGATCGACGG---ATCTCAGACT 22599497 Query 61480 TTTGGTGA-ACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTT 61538 || | || | ||| | |||| ||||| || || || | || ||| ||| || Sbjct 22599498 TTCGCCGAGAGGATCG-TGGCGTTTGCTTGCGTGGAAGGGATCTTCTTCTCCGGAAGCTT 22599556 Query 61539 TGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGA 61598 | | ||||| ||| ||||||| || || || ||||| ||| | |||||| ||| || Sbjct 22599557 CTGCTCCATCTTCTGGCTGAAGAAGCGAGGGCTCATGCCGGGTTTAACCTTCTCCAACGA 22599616 Query 61599 GTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTA 61658 |||||| || || ||||| ||| | || || || || || || || | || ||| Sbjct 22599617 GTTGATCTCTCGAGACGAAGGCCTTCACTGCGACTTCGCCTGCCTG--ATCTATACTCTA 22599674 Query 61659 TCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTAT 61718 | || || | |||||||||| ||| |||||| | || ||||| || Sbjct 22599675 T-TGAGGACGAAGCTCACGGAGGAGCGCGTGAAGTCGATTGTCTGCGACGCGGTGGAGAT 22599733 Query 61719 CGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACT 61778 ||| ||| ||| || ||||| | || | | | | || ||||| ||| | Sbjct 22599734 CGAGAGGGAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTGGGGATGAACCGTGATTT 22599793 Query 61779 AATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAAGC 61837 ||| ||||||||||| ||||| || || | || |||| || ||||||| | | Sbjct 22599794 GATGAGTCAGTATATTGAGTTTGTGGCGGATAGGCTTTTGGGCGCGCTTGGGTA-GGGGA 22599852 Query 61838 GGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGA 61897 | | || | | || || ||||||| ||||| |||||||||| | || || | Sbjct 22599853 AGGTGTACGGTGTGGCGAATCCGTTTGATTGGATGGAGTTGATTTCGCTTCAGGGGAAAA 22599912 Query 61898 CGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 |||| || || ||||| | || || || || || Sbjct 22599913 CGAACTTCTTTGAGAAGAGAGTTGGGGATTACCA 22599946 >seq2 Length=27864329 Score = 158 bits (174), Expect = 1e-33 Identities = 551/846 (65%), Gaps = 23/846 (3%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| ||||||||||| | ||||| ||||| | ||| ||||| Sbjct 22153040 ATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTCTCCCAAGAC 22153099 Query 61156 ATGAATGACTGGGAGCGT----TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTT 61211 | ||||||||| | | ||| ||| || | || ||||| ||||| || | Sbjct 22153100 ACCCGCGACTGGGAGACCAACCTCAACGA-CGGCGAGCGCCACTTCATCAAACACGTCCT 22153158 Query 61212 GGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCA 61271 || ||||| ||||| || ||||| |||||| |||||| | || ||| | Sbjct 22153159 CGCCTTCTTCGCCGCCTCCGACGGAATCGTCCTCGAGAATCTCGCCTCCCGGTTCATGTC 22153218 Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331 || ||||| || || ||||||||| |||||||| |||||||| || || |||||| | Sbjct 22153219 CGACGTGCAGGTCTCCGAGGCGCGTGCCTTCTACGGGTTCCAGATCGCGATTGAGAATAT 22153278 Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGA 61391 |||||||||||||||||| | | | ||||| ||||||| ||| ||| | || Sbjct 22153279 CCACTCGGAGATGTACAGCCTCTTGCTAGATACCTACATCAAGGACAACAAGGAGAGGGA 22153338 Query 61392 ACGATTGTTCAATGCCATCGAGACGATACC-GGCG--GTGAAGCGGAAAGCGGATTGGGC 61448 | | ||| || || ||||| || || ||| | ||| ||| || | ||||| Sbjct 22153339 CCATCTCTTCCGCGCGATTGAGACCATCCCTTGCGTCGCGAA---GAAGGCCCAATGGGC 22153395 Query 61449 CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGA-ACGATTGCTGGCATTTGCGG 61507 ||| || ||||| | | | | || || | || | ||| | |||| || ||| Sbjct 22153396 CTTGAAGTGGAT---CGATGGATCTCAGACTTTCGCAGAGAGGATCG-TGGCCTTCGCGT 22153451 Query 61508 TGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTG 61567 || || || | || ||| ||| || | | ||||| ||| | ||||| || | Sbjct 22153452 GCGTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGAG 22153511 Query 61568 GACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATT 61627 | || ||||| || || |||||| ||| ||| |||| || || ||||| ||| | || | Sbjct 22153512 GGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGCGGGACGAAGGCCTTCACT 22153571 Query 61628 GTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTG 61687 | || || || | || || | || || || | ||||||||||| | Sbjct 22153572 GCGACTTCGC---GTGCCTGATCTATACCTTGTTGAGGACGAAGCTATCGGAGGAGCGCG 22153628 Query 61688 TGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGC 61747 || ||| || | || ||||| ||||| ||| ||| || ||||| | | Sbjct 22153629 TGAAGTCGATCGTGTGCGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTC 22153688 Query 61748 CCGTCTCACTCATCGGCATGAATTGTGGAC-TAATGTCGCAGTATATTGAATTTGTTGCC 61806 || | | | | || ||||| | |||| | ||| ||||||||||| ||||| || Sbjct 22153689 CCTGCGCGTTGGTGGGGATGAACCG-GGACTTGATGAGTCAGTATATTGAGTTTGTGGCG 22153747 Query 61807 GACCGTCTGTT-GGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGA 61865 || | || || ||| ||||||| | | | | || | | || || ||||| Sbjct 22153748 GATAGGCTTTTGGGTGCGCTTGGGTACG-GGAAGGTGTACGGTGTGGCGAATCCGTTTGA 22153806 Query 61866 TTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGA 61925 || ||||| |||| ||||| | || || |||||||| |||||||| | || || || Sbjct 22153807 TTGGATGGAGTTGATCTCGCTTCAGGGTAAAACGAATTTCTTCGAGAAGAGGGTTGGTGA 22153866 Query 61926 CTATCA 61931 || || Sbjct 22153867 TTACCA 22153872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397372979105360