Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq502 149 1e-33 seq3 80.6 5e-13 seq5 77.0 6e-12 >seq502 Length=7756 Score = 149 bits (164), Expect = 1e-33 Identities = 228/324 (70%), Gaps = 6/324 (2%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| ||| | || ||||| | || ||||| | | | | Sbjct 627 AGGGGAGTGAAATAGATCCTGAAACCGTGTGCATACAAACAGTAGGAGCGGGCTTGTCCC 568 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| ||||||| |||||| | | ||| ||| ||| || || |||| Sbjct 567 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTGGCAAGCTTAACC 509 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | || || || || ||||||||| | || |||||| | ||| | ||| Sbjct 508 GAGTAGGGA-----AGGCGTAGCGAAAGCGAGTCCGAATAGGGCGTCTAGTCGCTGGGTG 454 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| |||||| ||| | |||||||||| |||||| | ||| Sbjct 453 TAGACCCGAAACCAGACGATCTATCCATGGCCAGGTTGAAGGTTGGGTAACACCAACTGG 394 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||||||||||| |||||||||||||| |||||| | || |||||||||||||| Sbjct 393 AGGACCGAACCCACTAACGTTGAAAAGTTAGGGGATGAGCTGTGGATAGGGGTGAAAGGC 334 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 || ||| |||||||||| || Sbjct 333 TAAACAAGTCTGGAAATAGCTGGT 310 >seq3 Length=28500605 Score = 80.6 bits (88), Expect = 5e-13 Identities = 208/310 (67%), Gaps = 9/310 (3%) Strand=Plus/Plus Query 12 GGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71 |||| |||||||||| | |||| ||| || ||||| || |||| ||| | | Sbjct 20648715 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAG--GAGCCCTGGGC 20648772 Query 72 T--GACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 | ||| |||||||| ||| | |||||||| ||| | | | | || || ||||||| Sbjct 20648773 TCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAG 20648831 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 || | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 20648832 GGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTT 20648887 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 | ||| |||| | |||||||| | | || |||| ||||| ||| | | || Sbjct 20648888 ATGGACCCGAACCTGGGTGATCTATCTATGACCAGGATGAAGCTTGGGTGAAACTAAGTG 20648947 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 |||| |||||||| | |||||||| | ||||||| | | || ||||||||||| | Sbjct 20648948 GAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATG 20649007 Query 310 CCAATCAAAC 319 ||| || ||| Sbjct 20649008 CCACTCGAAC 20649017 >seq5 Length=34971402 Score = 77.0 bits (84), Expect = 6e-12 Identities = 207/310 (67%), Gaps = 9/310 (3%) Strand=Plus/Minus Query 12 GGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71 |||| |||||||||| | |||| ||| || ||||| || |||| ||| | | Sbjct 22664879 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCTCAAGCAGTGGGAG--GAGCCCTGGGC 22664822 Query 72 T--GACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 | ||| |||||| | ||| | |||||||| ||| | | | | || || ||||||| Sbjct 22664821 TCTGACCGCGTGCATGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAG 22664763 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 || | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 22664762 GGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTT 22664707 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 | ||| |||| | |||||||| | | || |||| ||||| ||| | | || Sbjct 22664706 ATGGACCCGAACCTGGGTGATCTATCTATGACCAGGATGAAGCTTGGGTGAAACTAAGTG 22664647 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 |||| |||||||| | |||||||| | ||||||| | | || ||||||||||| | Sbjct 22664646 GAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATG 22664587 Query 310 CCAATCAAAC 319 ||| || ||| Sbjct 22664586 CCACTCGAAC 22664577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972438001664