Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq432 398 1e-108 seq11 398 1e-108 seq2 398 1e-108 seq10 269 4e-70 seq12588 259 7e-67 seq9 176 7e-42 >seq432 Length=8256 Score = 398 bits (440), Expect = 1e-108 Identities = 245/256 (96%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 6016 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 5959 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5958 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 5899 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 5898 CCCGGGCCTGTCGGCCAAGGTGTGA-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 5840 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 5839 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACG 5780 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 5779 GCCATAGTCCCTCTAA 5764 >seq11 Length=49703607 Score = 398 bits (440), Expect = 1e-108 Identities = 245/256 (96%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 37452437 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 37452380 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 37452379 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 37452320 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 37452319 CCCGGGCCTGTCGGCCAAGGTGTGA-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 37452261 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 37452260 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACG 37452201 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 37452200 GCCATAGTCCCTCTAA 37452185 Score = 398 bits (440), Expect = 1e-108 Identities = 245/256 (96%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 37464057 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 37464000 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 37463999 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 37463940 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 37463939 CCCGGGCCTGTCGGCCAAGGTGTGA-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 37463881 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 37463880 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACG 37463821 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 37463820 GCCATAGTCCCTCTAA 37463805 Score = 244 bits (270), Expect = 2e-62 Identities = 153/162 (94%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 95 CCATCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTG 154 ||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||| Sbjct 17420640 CCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGTGTGA-ACTCGTTG 17420698 Query 155 AATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17420699 AATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 17420758 Query 215 TGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 |||||||||||||| ||||||||| |||||| |||||| || Sbjct 17420759 TGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAA 17420800 >seq2 Length=29139806 Score = 398 bits (440), Expect = 1e-108 Identities = 245/256 (96%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 12801788 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 12801731 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12801730 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 12801671 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 12801670 CCCGGGCCTGTCGGCCAAGGTGTGA-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 12801612 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 12801611 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACG 12801552 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 12801551 GCCATAGTCCCTCTAA 12801536 Score = 352 bits (390), Expect = 4e-95 Identities = 235/256 (92%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||| | Sbjct 24968654 GTACAAAGGGCAAGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTACGAATT-C 24968597 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24968596 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 24968537 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||||| | ||| ||||||||||||||||||||||||| |||| Sbjct 24968536 CCCGGGCCTGTCGGCCAAGGTG-TGAACTTGTTGAATACATCAGTGTAGCGCGCGGGCGG 24968478 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||||| ||||||||||||||||||||| ||||||| |||||| ||||| ||| |||| | Sbjct 24968477 CCCAGGACATCTAAGGGCATCACAGACTTGTTATTACCTCAACCTTCCTTGGTATAAACG 24968418 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 24968417 GCCATAGTCCCTCTAA 24968402 >seq10 Length=25316904 Score = 269 bits (298), Expect = 4e-70 Identities = 189/209 (90%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 48 TACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA 107 ||||||||||| |||| |||||||||||||||| |||||||||||||| ||||||||||| Sbjct 24329820 TACTAGGAATT-CCTCATTGAAGACCAACAATTCCAATGATCTATCCC-ATCACGATGAA 24329763 Query 108 ATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGT 167 |||||||||||||||||| |||||||||||||||| | |||||||||||| |||||||| Sbjct 24329762 ATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGTGTGA-ACTCGTTGAATATATCAGTGT 24329704 Query 168 AGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 |||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||| Sbjct 24329703 AGCGCG--TGCAGCCCAGAACATCTAAGGACATCACAAACCTGTTATTGCCTCAAACTTC 24329646 Query 228 CGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 | ||||||||| | |||| |||||| || Sbjct 24329645 CTTGGCCTAAACGACCATAGTCCCTCTAA 24329617 >seq12588 Length=344 Score = 259 bits (286), Expect = 7e-67 Identities = 176/194 (91%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||| | Sbjct 190 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-C 133 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||| || ||||||||| ||||||||||||||||||| | ||||||||||| Sbjct 132 CTCGTTGAAGACTAATAATTGCAATAATCTATCCCCATCACGATGCAGATTCAAAGATTA 73 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| | | || |||||| ||||| |||||||||| |||||||||||||||||||||| Sbjct 72 CCCGGGCTTCTCAGCCAAG--GATAGGCTCGTTGAATGCATCAGTGTAGCGCGCGTGCGG 15 Query 181 CCCAGAACATCTAA 194 |||||||||||||| Sbjct 14 CCCAGAACATCTAA 1 >seq9 Length=38094978 Score = 176 bits (194), Expect = 7e-42 Identities = 177/224 (79%), Gaps = 12/224 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||| |||||| | Sbjct 34253332 GTACAAAGGGCAGGGACGTAATCAACGCAAGCTA-ATGACTCACGCTTACTGGGAATT-C 34253389 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT---TTCAAA-G 116 |||||| | | ||| |||| ||||| | ||||||||||||| ||| ||||| | Sbjct 34253390 CTCGTTCATGGGCAATAATTACAATGCCCAATCCCCATCACGA---AATGGGTTCAAGCG 34253446 Query 117 ATTACCCGGACCTGTCGGCCAAGGTGATAGACT---CGTTGAATACATCAGTGTAGCGCG 173 |||||| ||| |||| ||| | || | || ||| || |||||||||| || Sbjct 34253447 GTTACCCACTCCTTTCGGAGCAGGAAACAGTATGCACGATGACCACTTCAGTGTAGCACG 34253506 Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||||||||| | ||||||||||||||||||||||||||||||| Sbjct 34253507 CGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 34253550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751728910580