Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq502 113 4e-23 >seq502 Length=7756 Score = 113 bits (124), Expect = 4e-23 Identities = 140/188 (74%), Gaps = 9/188 (5%) Strand=Plus/Minus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| | ||||||||||| ||| || |||||| ||||||||| || ||||||||||| Sbjct 1100 GCACATGGTGGATGCCTTGGCGATCATAGGCGATGAAGGACGTTGTAGCCTGCGAAAAGC 1041 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA 120 |||||||| ||||| | | | ||||||||||||| ||||||||||| ||||| | Sbjct 1040 TACGGGGAGCTGGCAAACAAGCTTTGATCCGTAGATGTCCGAATGGGGAAACCCACCCTT 981 Query 121 TTGGAGATATATCAT----AACGC-TAGGC---GTTAGGCGAACGTGGGGAACTGAAACA 172 || | | ||| | | || | ||||| |||||||| || ||||||||||| Sbjct 980 TTAGGGGTATCCCGTGCTGAATACATAGGCACGAGGAGGCGAACCCGGAGAACTGAAACA 921 Query 173 TCTAAGTA 180 |||||||| Sbjct 920 TCTAAGTA 913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476628117772