Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq10 217 4e-54 seq19 183 8e-44 seq4835 152 1e-34 seq35426 127 5e-27 seq12 127 5e-27 seq7 109 1e-21 seq37087 105 2e-20 seq5 87.8 5e-15 >seq10 Length=25316904 Score = 217 bits (240), Expect = 4e-54 Identities = 294/409 (72%), Gaps = 2/409 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| | ||||||| |||| | ||||||||||||||| ||| ||| Sbjct 22353154 TATCTGGGGAATAAGCATCAGCTAACTCTGTGCTATCAGCCGCGGTAATACAGAGGATGC 22353213 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | |||| | | || Sbjct 22353214 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 22353273 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 22353274 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTTGAGTACGGTAGG 22353333 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||||||||| || | | ||||||||| || Sbjct 22353334 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 22353393 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| ||||||| || | Sbjct 22353394 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 22353453 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 |||||||||||| ||||||| ||| |||||||| ||||| | || | | | Sbjct 22353454 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 22353513 Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || ||||||||||||| |||| ||||||||||| ||| Sbjct 22353514 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 22353562 >seq19 Length=26736940 Score = 183 bits (202), Expect = 8e-44 Identities = 243/334 (73%), Gaps = 10/334 (3%) Strand=Plus/Minus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 18674917 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCAAGTG 18674858 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT---TGTGTAAGACAGGTGTGA 124 || ||||||| ||||||||||||| | || ||||||| | | || || ||| Sbjct 18674857 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAG---TGA 18674801 Query 125 AATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183 || | | | || ||| | | ||| || | || ||| ||||| | ||||| Sbjct 18674800 AAGTCGC---CAAAAAGTGGCGGAATGCTTTCGAAACCAATTCACTTGAGTGAGACAGAG 18674744 Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243 | | |||||||| | ||| || ||||||| |||| | | |||||| |||| || Sbjct 18674743 GAGAGTGGAATTTCGTGTGGAGGGGTGAAATCTACAGATCTACGAAGGAACGCCAAAAGC 18674684 Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303 ||||||||| | ||||| || |||||| | ||||||| |||||||| ||| || Sbjct 18674683 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACGGG 18674624 Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||| ||| |||||||| Sbjct 18674623 ATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 18674590 >seq4835 Length=563 Score = 152 bits (168), Expect = 1e-34 Identities = 236/334 (71%), Gaps = 10/334 (3%) Strand=Plus/Plus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||| ||||| ||||||||| ||| ||| ||||| | Sbjct 180 GAGGAAGAAGCCCCGGCTAACTCCGTGTCAGCAACCGCGGTAAAACGGGGGGGGCAAGTG 239 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT---TGTGTAAGACAGGTGTGA 124 || | ||||| | ||||||||||| | || ||||| | | | || || ||| Sbjct 240 TTCTTTGGAATGATTGGGCGTAAAGGGCACGTAGGCGATGAATCGGGTTGAAAG---TGA 296 Query 125 AATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183 || | | | || ||| | | ||| || || ||| ||||| | ||||| Sbjct 297 AAGTCGC---CAAAAAGTGGCGGAATGCTTTCAAAACCAATTCACTTGAGTGAGACAGAG 353 Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243 | | |||||||| | ||| || ||||||| |||| | | |||||| |||| || Sbjct 354 GAGAGTGGAATTTCGTGTGGAGGGGTGAAATCTACAGATCTACGAAGGAACGCCAAATGC 413 Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303 ||||||| | | ||||| || |||||| | ||||||| ||||||||| || || Sbjct 414 GAAGGCAACTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCAGACGGG 473 Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||| ||| |||||||| Sbjct 474 ATTAGATACCCTGGTAGTCCATGCCATAAACGAT 507 >seq35426 Length=205 Score = 127 bits (140), Expect = 5e-27 Identities = 84/93 (90%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||||||||||||||||| ||||||||| |||||||||||||||||||| ||| ||| ||| Sbjct 101 TACCTGAAGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGAGGATGC 42 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGT 95 ||| |||| |||||| |||||||||||||||| Sbjct 41 AAGTGTTATCCGGAATCACTGGGCGTAAAGCGT 9 >seq12 Length=33044737 Score = 127 bits (140), Expect = 5e-27 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| | ||| ||| |||||||||||||| || | | ||||||||| |||||| || Sbjct 10434619 GGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGC 10434560 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | | ||||| |||||||| || | |||||||| ||||||| || |||||||| Sbjct 10434559 ACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGA 10434500 Query 310 TACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCTTG- 368 ||||| ||||||| ||| |||||||| ||||| | || | | | || || Sbjct 10434499 TACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGC 10434440 Query 369 -GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || ||||||||||||| |||| ||||||||||| ||| Sbjct 10434439 AGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 10434398 >seq7 Length=33617777 Score = 109 bits (120), Expect = 1e-21 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| ||| Sbjct 403563 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 403504 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGT 95 |||||||| |||||| | |||||||||||||| Sbjct 403503 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGT 403471 >seq37087 Length=200 Score = 105 bits (116), Expect = 2e-20 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 200 GTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGG 259 ||| || ||||||| |||| | | |||||| |||| ||||||||||| | |||| Sbjct 7 GTGGAGGGGTGAAATCTACAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGG 66 Query 260 GATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTA 319 | || |||||| | ||||||| |||||||| ||| |||||||||||||||||| Sbjct 67 GTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACGGGATTAGATACCCTGGTA 126 Query 320 GTCCACGCCCTAAACGAT 337 ||||| ||| |||||||| Sbjct 127 GTCCATGCCGTAAACGAT 144 >seq5 Length=34971402 Score = 87.8 bits (96), Expect = 5e-15 Identities = 125/175 (71%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 237 CAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGC 296 ||| |||||| ||| | ||||| |||||||| || | |||||||| ||||||| Sbjct 22668613 CAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGC 22668554 Query 297 AAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGA 356 || ||||||||||||| ||||||| ||| |||||||| ||||| | || | Sbjct 22668553 GAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCG 22668494 Query 357 TTTACTTCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | | || || || ||||||||||||| |||| ||||||||||| ||| Sbjct 22668493 TATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 22668439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289120114048