Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq3 145 1e-32 seq5 73.4 5e-11 >seq3 Length=28500605 Score = 145 bits (160), Expect = 1e-32 Identities = 181/248 (73%), Gaps = 20/248 (8%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || Sbjct 20650876 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGG 20650818 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||||||| || || |||||||| || Sbjct 20650817 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT-------- 20650766 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | || || | |||||||||||||||||||||||||||| |||||||||| Sbjct 20650765 -----TTGTG----AG--GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAG 20650717 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | |||| | || | ||| ||||||||||||| |||||||||||||| Sbjct 20650716 TTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGT 20650657 Query 241 TTACGGTA 248 || |||| Sbjct 20650656 TTCGGGTA 20650649 Score = 145 bits (160), Expect = 1e-32 Identities = 181/248 (73%), Gaps = 20/248 (8%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || Sbjct 20651617 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGG 20651559 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||||||| | || || ||| |||| || Sbjct 20651558 AGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGTGACCCCCT-------- 20651507 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | || || | |||||||||||||||||||||||||||| |||||||||| Sbjct 20651506 -----TTGTG----AG--GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAG 20651458 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | |||| | || | ||| ||||||||||||| |||||||||||||| Sbjct 20651457 TTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGT 20651398 Query 241 TTACGGTA 248 || |||| Sbjct 20651397 TTCGGGTA 20651390 >seq5 Length=34971402 Score = 73.4 bits (80), Expect = 5e-11 Identities = 67/85 (79%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 158 AGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTC 217 |||||||||| ||||||||| | |||||| || |||| | | | || | |||||| | Sbjct 26984127 AGTTACGGGGTCATTTTGCCCAGTTCCTTCGACATGGTTCTCTCAAGCGTCCTAGTATAC 26984068 Query 218 TCTACCTGACCACCTGTGTCGGTTT 242 ||||| || ||||||||||||||| Sbjct 26984067 TCTACTTGTTCACCTGTGTCGGTTT 26984043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694149674876