Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq3 269 7e-70 >seq3 Length=28500605 Score = 269 bits (298), Expect = 7e-70 Identities = 308/418 (74%), Gaps = 27/418 (6%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 20651061 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 20651002 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20651001 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 20650942 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 20650941 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 20650882 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | ||||||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 20650881 ACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 20650822 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 20650821 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 20650768 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| ||| | ||||||||||||||||||| || || Sbjct 20650767 CTTTGTGAG-----------------GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATT 20650725 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 20650724 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 20650667 Score = 219 bits (242), Expect = 1e-54 Identities = 301/426 (71%), Gaps = 35/426 (8%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| |||| || ||| |||||| Sbjct 20651810 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGATAGTGCCCAGATCGTT 20651751 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| || |||| ||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 20651750 ACGCCTTTTGTGCGGGTTGGAACTTACCCGACAAGGAATTTCGCCACCTTAGGACCGTTA 20651691 Query 133 TTGTTACGGCCGCCG--------TTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTA 180 | ||||| |||| || || |||||||||||| || ||| | | | | Sbjct 20651690 TAGTTACAGCCGTCGTTCACCANTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCA 20651631 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 | | ||| | ||||||||||||||| |||||||||||| ||| |||| | ||| Sbjct 20651630 GGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTT 20651571 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 || ||||| ||| |||||||||| ||||||||||| |||||||| || |||| Sbjct 20651570 ACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGTGACC 20651511 Query 301 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG 360 ||| ||| ||| | |||||||||||||||||| Sbjct 20651510 ------CCCTTTGTGAG-----------------GGGGCACCCCTTCTCCCGAAGTTACG 20651474 Query 361 GTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCC 420 | || ||||||| |||||||| ||||| |||| || ||| ||||||||||||| Sbjct 20651473 GGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCT 20651414 Query 421 AACCAC 426 | |||| Sbjct 20651413 ACCCAC 20651408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260330831104