Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq3 340 4e-91 >seq3 Length=28500605 Score = 340 bits (376), Expect = 4e-91 Identities = 290/355 (82%), Gaps = 12/355 (3%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 20651061 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 20651002 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20651001 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 20650942 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 20650941 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 20650882 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||||||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 20650881 ACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 20650822 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC-----TGT 297 || || ||||||||||||||||||||||||| |||||| || ||||| || ||| Sbjct 20650821 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGT 20650762 Query 298 CATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | | ||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 20650761 GAGGG---GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 20650710 Score = 295 bits (326), Expect = 1e-77 Identities = 284/363 (78%), Gaps = 20/363 (6%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | |||| |||||||| |||||| Sbjct 20651810 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGATAGTGCCCAGATCGTT 20651751 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 20651750 ACGCCTTTTGTGCGGGTTGGAACTTACCCGACAAGGAATTTCGCCACCTTAGGACCGTTA 20651691 Query 127 TAGTTACGGCCGCCGTTTACT--------GGGGCTTAAGTTCACTGCTTCGATTGC-TC- 176 ||||||| |||| |||| || ||||||| || | ||| | | | || Sbjct 20651690 TAGTTACAGCCGTCGTTCACCANTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCA 20651631 Query 177 --TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTT 234 | || | |||||||||||| |||| |||||||||||||| || |||||| ||||| Sbjct 20651630 GGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTT 20651571 Query 235 GCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC 294 |||||| || || ||||||||||||||||||||||||| ||||||| || ||| | || Sbjct 20651570 ACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGTGACC 20651511 Query 295 -----TGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCC 349 ||| | | ||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 20651510 CCCTTTGTGAGGG---GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCC 20651454 Query 350 TTA 352 ||| Sbjct 20651453 TTA 20651451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062004659712