Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq432 307 2e-81 seq11 307 2e-81 seq2 307 2e-81 seq9 179 6e-43 seq23656 168 1e-39 seq10 167 4e-39 seq85 109 9e-22 seq18 105 1e-20 >seq432 Length=8256 Score = 307 bits (340), Expect = 2e-81 Identities = 224/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5873 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 5814 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || | | | ||||||||||||||||||| ||| Sbjct 5813 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCC 5754 Query 122 ACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || | || | | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 5753 GTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 5694 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5693 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 5634 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 5633 AAAGAGCTCTCAGTCTGTC 5615 >seq11 Length=49703607 Score = 307 bits (340), Expect = 2e-81 Identities = 224/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17420691 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 17420750 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || | | | ||||||||||||||||||| ||| Sbjct 17420751 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCC 17420810 Query 122 ACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || | || | | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 17420811 GTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 17420870 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17420871 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 17420930 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 17420931 AAAGAGCTCTCAGTCTGTC 17420949 Score = 307 bits (340), Expect = 2e-81 Identities = 224/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 37452294 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 37452235 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || | | | ||||||||||||||||||| ||| Sbjct 37452234 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCC 37452175 Query 122 ACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || | || | | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 37452174 GTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 37452115 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 37452114 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 37452055 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 37452054 AAAGAGCTCTCAGTCTGTC 37452036 Score = 307 bits (340), Expect = 2e-81 Identities = 224/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 37463914 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 37463855 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || | | | ||||||||||||||||||| ||| Sbjct 37463854 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCC 37463795 Query 122 ACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || | || | | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 37463794 GTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 37463735 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 37463734 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 37463675 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 37463674 AAAGAGCTCTCAGTCTGTC 37463656 >seq2 Length=29139806 Score = 307 bits (340), Expect = 2e-81 Identities = 224/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12801645 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 12801586 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || | | | ||||||||||||||||||| ||| Sbjct 12801585 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCC 12801526 Query 122 ACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || | || | | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 12801525 GTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 12801466 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12801465 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 12801406 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 12801405 AAAGAGCTCTCAGTCTGTC 12801387 Score = 259 bits (286), Expect = 8e-67 Identities = 205/245 (84%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||| |||| Sbjct 24968497 TCAGTGTAGCGCGCGGGCGGCCCAGGACATCTAAGGGCATCACAGACTTGTTATTACCTC 24968438 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG--T 133 || ||||| | | | | | | |||||||||||||||| |||||| || | | Sbjct 24968437 AACCTTCCTTGGTATAAACGGCCATAGTCCCTCTAAGAATCCAGCCGTGAAGGGATGCCT 24968378 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | | |||| |||||||| |||||||||| |||| ||||||||||||||||||| Sbjct 24968377 CCACGTAGCTAGTTAGCAGGCCGAGGTCTCGTTTGTTAATGGAATTAACCAGACAAATCG 24968318 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| | Sbjct 24968317 CTCCACCAACTAAGAACGGTCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGT 24968258 Query 254 CTGTC 258 ||||| Sbjct 24968257 CTGTC 24968253 >seq9 Length=38094978 Score = 179 bits (198), Expect = 6e-43 Identities = 110/117 (94%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 34253733 CTATTTAGTAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 34253792 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 34253793 ACTAAGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCTCTCAATCTGTC 34253849 Score = 89.7 bits (98), Expect = 8e-16 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 |||||||||| |||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 34253494 TCAGTGTAGCACGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 34253550 >seq23656 Length=256 Score = 168 bits (186), Expect = 1e-39 Identities = 145/177 (82%), Gaps = 3/177 (2%) Strand=Plus/Plus Query 83 CATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATA--GTCGATGGG 140 ||||| || | | ||||||||||||||||||| ||| | | | | | | || | | Sbjct 1 CATTGCCTAAACGACAATAGTCCCTCTAAGAAGTCAGGCGCGTCCAAAAAGGACGC-GTG 59 Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||||||||||| | ||||||||||||||| |||||| |||| ||||| || ||||| Sbjct 60 ACTATTTAGCAGGCTGAGGTCTCGTTCGTTACCGGAATCAACCTGACAAGGCAACCCACC 119 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||| Sbjct 120 AACTAAGAACGGCCATGCACCACCACCCACAGAATCAAAAAAGAGCTCTCAATCTGT 176 >seq10 Length=25316904 Score = 167 bits (184), Expect = 4e-39 Identities = 149/183 (81%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||| ||| ||||||||||||||||| ||||||| ||||||||||||||| Sbjct 24329710 TCAGTGTAGCGCG--TGCAGCCCAGAACATCTAAGGACATCACAAACCTGTTATTGCCTC 24329653 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAA-CCAT-AGT 133 |||||||| | | || | | | ||||||||||||||||||| ||| || || | Sbjct 24329652 AAACTTCCTTGGCCTAAACGACCATAGTCCCTCTAAGAAGCCGGCCGTGAAGGGATGCCT 24329593 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | | |||| |||||||| | |||||| |||||||| |||||||||| ||||||||| Sbjct 24329592 CCACGTAGCTAGTTAGCAGGCTGAGGTCTTGTTCGTTAACGGAATTAACAAGACAAATCG 24329533 Query 194 CTC 196 ||| Sbjct 24329532 CTC 24329530 >seq85 Length=56525 Score = 109 bits (120), Expect = 9e-22 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 184 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 243 ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 36177 AGACAAATCGCTCCACCAACTAAGAACGAGCATGCACCACCACCCATAGAATCAAGAAAG 36236 Query 244 AGCTATCAATCTGTC 258 | || ||| |||||| Sbjct 36237 ACCTCTCAGTCTGTC 36251 Score = 109 bits (120), Expect = 9e-22 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 184 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 243 ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 42546 AGACAAATCGCTCCACCAACTAAGAACGAGCATGCACCACCACCCATAGAATCAAGAAAG 42605 Query 244 AGCTATCAATCTGTC 258 | || ||| |||||| Sbjct 42606 ACCTCTCAGTCTGTC 42620 >seq18 Length=20869551 Score = 105 bits (116), Expect = 1e-20 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||||| | || | |||||||||| ||||||||||||||||||||| |||||| Sbjct 8478938 GCTAGTTAGCAGGCTGAGATTTCGTTCGTTAACGGAATTAACCAGACAAATCATTCCACC 8478879 Query 201 AACTAAGAACGGCCATGCACC 221 ||||| ||||||| ||||||| Sbjct 8478878 AACTATGAACGGCTATGCACC 8478858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796512760572