Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq9 408 7e-112 seq12 345 7e-93 seq7 226 5e-57 seq22790 95.1 2e-17 seq29042 87.8 3e-15 seq2920 82.4 1e-13 >seq9 Length=38094978 Score = 408 bits (452), Expect = 7e-112 Identities = 267/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | || ||| ||||||||||||||||||||||||||||| Sbjct 34248484 TACTAGGTTGAATTACTATCGCGACG-CGGGCATCAGTAGGGTAAAACTAACCTGTCTCA 34248542 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 34248543 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 34248602 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 34248603 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 34248662 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 34248663 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 34248722 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| || |||||||||||||||||||| |||||| |||| |||||| Sbjct 34248723 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 34248775 Score = 374 bits (414), Expect = 1e-101 Identities = 262/295 (89%), Gaps = 5/295 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GT-CATCAGTAGGGTAAAACTAACCTGTCT 58 ||||| | ||||||| || | ||||| || ||||||||||||||||||||||||||| Sbjct 34266974 TACTAGGTTGAATTACTATCG---CGACGTGTGCATCAGTAGGGTAAAACTAACCTGTCT 34267030 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 || |||||||||||||||||| | |||||||||| |||||||||||||||||| ||| Sbjct 34267031 CACGACGGTCTAAACCCAGCTGATGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGT 34267090 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 34267091 GAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGTAACGCTGCT 34267150 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 34267151 ACGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGC 34267210 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||| ||| || |||||||||||||||||||| |||||| |||| |||||| Sbjct 34267211 TTCAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 34267265 Score = 284 bits (314), Expect = 2e-74 Identities = 198/224 (88%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 34244640 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGCGAACTCTGCTTC 34244699 Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190 | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 34244700 GCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGG 34244759 Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA-TTTCG 249 | ||||||||||||||||||||||||||||||||||| ||||||| | | ||| | || Sbjct 34244760 CCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGATTGAAACTCTCA 34244819 Query 250 AGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | | |||||||||||||||| | ||||| ||| |||||| Sbjct 34244820 ATAATCAAAAGGATCGATAGGCCCCGCTTTCGCGGTCCGTATTC 34244863 >seq12 Length=33044737 Score = 345 bits (382), Expect = 7e-93 Identities = 254/293 (87%), Gaps = 2/293 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | | | | ||||||||||||||||||||||||||||| Sbjct 25874995 TACTAGGTTGAATTACTATCGTGATG-CAGACATCAGTAGGGTAAAACTAACCTGTCTCA 25875053 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||| | |||||||| |||||| |||||||||||||||||| ||| || Sbjct 25875054 CGACGGTCTAAACCTAACTCACGTTTCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 25875113 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25875114 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 25875173 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||| | Sbjct 25875174 GAACGCTTGGTTGCCACAAGCCAGTTATCCCTATGGTAACTTTTCTAACACCTCTAGCTT 25875233 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| || || |||||||||| | || |||| | |||| |||| |||||| Sbjct 25875234 CAAATTCTGAAGGTCTAAAGGATCAACAGACCACGC-TTCAAGGTTCGTATTC 25875285 >seq7 Length=33617777 Score = 226 bits (250), Expect = 5e-57 Identities = 174/205 (85%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 88 CTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGC 147 ||| | ||||||||||||| |||| ||| ||||||| |||| ||||||| ||||| Sbjct 9055892 CTAATGGTGGGTGAACAATTCAACACTTGGTGAATTCTACTTCACAATGATAGAAAGAGT 9055833 Query 148 CGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 207 |||||| ||||||||||||||||||||||| |||||||||| ||||||| |||| | ||| Sbjct 9055832 CGACATGGAAGGATCAAAAAGCAACGTCGC-ATGAACGCTTAGCTGCCATAAGCTATTTA 9055774 Query 208 TCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGAT 267 || |||||||||||||||| |||||||||| | ||||||||| | ||||| ||||||| Sbjct 9055773 TCTTTGTGGTAACTTTTCTGACACCTCTAGCTTTAAATTTCGAAAGTCTAAAAGATCGAT 9055714 Query 268 AGGCCACACTTTCATGGTTTGTATT 292 ||||||| |||||| |||| ||||| Sbjct 9055713 AGGCCACGCTTTCACGGTTCGTATT 9055689 >seq22790 Length=261 Score = 95.1 bits (104), Expect = 2e-17 Identities = 71/82 (87%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTC-ATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| ||||||| || | || ||||| | ||||||||||||||||||||||||| Sbjct 180 TACTGAGCCGAATTACTATGGCGGAATCGGTCCAACAGTAGGGTAAAACTAACCTGTCTC 239 Query 60 ATGACGGTCTAAACCCAGCTCA 81 | |||||||||||||||||||| Sbjct 240 ACGACGGTCTAAACCCAGCTCA 261 >seq29042 Length=229 Score = 87.8 bits (96), Expect = 3e-15 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59 ||||||| ||||||| |||| | || | |||||||||||||||||||||||||||| Sbjct 78 TACTAAGTTGAATTACTATTGCAACAACACTTCATCAGTAGGGTAAAACTAACCTGTCTC 19 Query 60 ATGACGGTCTAAACCCAG 77 | |||||||||||||||| Sbjct 18 ACGACGGTCTAAACCCAG 1 >seq2920 Length=791 Score = 82.4 bits (90), Expect = 1e-13 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||| | ||| |||| |||||||||||||||||||||||||||||| Sbjct 715 TACTGAGCAGGATTTCTTTTGCAACGACAAGTCATCAGTAGGGTAAAACTAACCTGTCTC 774 Query 60 ATGACGGTCTAAACCCA 76 | ||||||||||||||| Sbjct 775 ACGACGGTCTAAACCCA 791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854082060672