Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq13 120 6e-25 seq3 120 6e-25 seq5 91.5 3e-16 >seq13 Length=24101694 Score = 120 bits (132), Expect = 6e-25 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 ||| |||||||| || || | |||||||| | |||| | || |||||||||||||||| Sbjct 17116434 AGTACAAAGGCAGAAAGGAGCTTGACTGCAAGACCCACCCATCAAGCAGGGACGAAAGTC 17116493 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 | |||| | ||||| |||||| || ||||| ||||||||||| ||||||||||| ||| Sbjct 17116494 AGCCTTAGTAATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACT 17116553 Query 331 CTGGGGATA 339 || ||||| Sbjct 17116554 CTATGGATA 17116562 >seq3 Length=28500605 Score = 120 bits (132), Expect = 6e-25 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 214 GCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGG 273 ||||||||| ||||| | |||| ||| | |||| | ||| |||||| |||||||||| Sbjct 20677955 GCAAAGGCAGAAGGGAGCTTGAATGCAAGACCCACCCGTCGAGCAGGTTCGAAAGTCGGC 20678014 Query 274 CTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTG 333 |||| |||| || |||||| || ||||| ||||||||||| | ||||||||| ||| || Sbjct 20678015 CTTAGTGATACGACGGTGCCGAGTGGAAGGGCCGTCGCTCAATGGATAAAAGTTACTCTA 20678074 Query 334 GGGATA 339 |||||| Sbjct 20678075 GGGATA 20678080 >seq5 Length=34971402 Score = 91.5 bits (100), Expect = 3e-16 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| ||||| | |||||||| | |||| | ||| |||||||||||||||| Sbjct 21946448 AGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTC 21946389 Query 271 GGGCTTAATGATCCGGCGGT 290 || |||| ||||||||| || Sbjct 21946388 GGCCTTAGTGATCCGGCTGT 21946369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982034429312