Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq502 493 3e-137 seq5 223 9e-56 seq3 223 9e-56 seq11 188 2e-45 seq20524 113 1e-22 >seq502 Length=7756 Score = 493 bits (546), Expect = 3e-137 Identities = 367/415 (88%), Gaps = 11/415 (3%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| || ||||||||| ||||| |||| ||||||||||||||||| | Sbjct 344 CCTATCCACAGCTCATCCC-CTAACTTTT-CAACGTTAGTGGGTTCGGTCCTCCAGTTGG 401 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||||||||||| ||||||| |||| |||||||||| | ||||| |||||||| | Sbjct 402 T-GTTACCCAACCTT-CAACCTGGCCAT-GGATAGATCGTCTGGTTT-CGGGTCTACA-C 456 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183 ||||||||||||||||||| | |||||||||| |||||||||| ||||| ||||||||| Sbjct 457 CCAGCGACTAGACGCCCTATTCGGACTCGCTTT-CGCTACGCCTTCCCTACTCGGTTAAG 515 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 ||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 516 CTT-GCCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACGGGACAA 574 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 | ||||| |||| ||||| ||| ||||||||||||||||||||||||||||| |||| Sbjct 575 -GCCCGCTCCTACTGTTTGTATGCACACGGTTTCAGGATCTATTTCACTCCCCTC-CCGG 632 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 633 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCGATCATGAGTATTTAG 692 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||||||||||||||| |||||||| | ||||||||| |||| |||||| Sbjct 693 CCTTGGAGGATGGTCCCCCCATGTTCAGACAGAATTTCTCGTGTTCCGCCCTACT 747 >seq5 Length=34971402 Score = 223 bits (246), Expect = 9e-56 Identities = 309/415 (74%), Gaps = 16/415 (4%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| ||||||||||| |||||| ||||| | Sbjct 22664601 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 22664657 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||||| ||||||| ||| | || |||||| || | || Sbjct 22664658 ACCCAAGCTT-CATCCTGGTCATAG-ATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 22664713 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 22664714 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 22664771 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| | | |||| |||| | | || Sbjct 22664772 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACATGCACGCGGTCAG--AGCCCAGG 22664828 Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 | | |||||||||||| || |||||||||| | ||||||||||||||| | |||| Sbjct 22664829 GCTCCTCCCACTGCTTGAGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 22664887 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||| || |||||||||||||||| ||| |||||||||| ||| ||||||||||| Sbjct 22664888 TTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 22664947 Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 22664948 TTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 22665002 >seq3 Length=28500605 Score = 223 bits (246), Expect = 9e-56 Identities = 309/415 (74%), Gaps = 16/415 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| ||||||||||| |||||| ||||| | Sbjct 20648993 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 20648937 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||||| ||||||| ||| | || |||||| || | || Sbjct 20648936 ACCCAAGCTT-CATCCTGGTCATAG-ATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 20648881 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 20648880 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 20648823 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | || Sbjct 20648822 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCAGG 20648766 Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 | | |||||||||||| || |||||||||| | ||||||||||||||| | |||| Sbjct 20648765 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 20648707 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||| || |||||||||||||||| ||| |||||||||| ||| ||||||||||| Sbjct 20648706 TTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 20648647 Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| | | |||||| | ||||| || || | ||||| || | |||||| Sbjct 20648646 TTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGTTACTCG 20648592 >seq11 Length=49703607 Score = 188 bits (208), Expect = 2e-45 Identities = 294/404 (73%), Gaps = 15/404 (4%) Strand=Plus/Minus Query 20 TCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTT 79 |||||| | ||||||||| | |||||| || |||||| ||| | | |||||| |||| Sbjct 16791558 TCCGCTGA-TTTTTCAACATCACTCGGTTTGGACCTCCACTTAATT-TCACCCAAGCTTT 16791501 Query 80 CAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCC 139 | |||| ||||| ||||||| ||| | || ||||||||| | | ||| | ||| Sbjct 16791500 -ATCCTGGTCATAG-ATAGATCACCCAGGTT-CGGGTCTATAAGC-ATTGACAATT-GCC 16791446 Query 140 CTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAA 197 ||| |||||||||||| ||||||| ||| | ||| |||| | ||||||| Sbjct 16791445 CTATGAAGACTCGCTTT-CGCTACGGCTCGGGTGGGTTCCCTTAACCAA-GCCACTGCCT 16791388 Query 198 ATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGC-TCCCAC 256 | |||||| | | |||| | ||| ||| | | |||| | | || | | |||||| Sbjct 16791387 TTGAGTCGCCGGCTCATTCTTCAACAGGCATGTGGTCAG--AGCCCAGGGCTCCTCCCAC 16791330 Query 257 TGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCC 316 |||||| || || ||||||| | |||||||||||||| | | |||||||||||| || Sbjct 16791329 TGCTTGGGAGCTTATGGTTTCATGTTCTATTTCACTCCCATATG-GGGGTTCTTTTCACC 16791271 Query 317 TTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGG 376 |||||||||||||||| ||| |||||||||| ||| |||||||||||||| | | ||| Sbjct 16791270 CTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGG 16791211 Query 377 TCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| | ||||| || || | ||||| || | ||||||| Sbjct 16791210 TCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 16791167 >seq20524 Length=274 Score = 113 bits (124), Expect = 1e-22 Identities = 117/152 (77%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 269 TACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGG 328 |||||||||| | ||||||||||||||| | |||||||||||| | |||||||| || Sbjct 273 TACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTCTTTTCACTCTTCCCTCATGG 215 Query 329 TACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATT 388 ||||| ||| |||||||||| || |||||||||||||| | |||||| | ||| Sbjct 214 TACTACTTCGCTATCGGTCATCCAAGAGTATTTAGCCTTGCAAAGTGGTCCTTGCTGATT 155 Query 389 CAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 || || || | ||||| || | ||||||| Sbjct 154 CACACGGGATTCCACGTGCCCCATGCTACTCG 123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241137975808