Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq5 235 1e-59 seq3 235 1e-59 seq20 206 6e-51 seq502 147 5e-33 >seq5 Length=34971402 Score = 235 bits (260), Expect = 1e-59 Identities = 304/409 (74%), Gaps = 18/409 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 22663985 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 22664044 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||||| | |||| | | |||||| |||| | || |||||| ||| Sbjct 22664045 GAGGAACCCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 22664104 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || |||||| | | || | ||| ||||| || || | | Sbjct 22664105 ACATTCTCGCTTCCGCTTCG--TCCACCGC-CGCTCGCGCGGTTGCTTCCCC-CTAAGGC 22664160 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 22664161 GGAACGCTCCCCTACCGATGCATTTTGACA---TCCCACAGCTTCGGCAGATCGCTTA-G 22664216 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 22664217 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 22664275 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 22664276 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 22664335 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||||||||||||||||||||| Sbjct 22664336 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTTCCCTCTCG 22664384 >seq3 Length=28500605 Score = 235 bits (260), Expect = 1e-59 Identities = 304/409 (74%), Gaps = 18/409 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 20649609 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 20649550 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||||| | |||| | | |||||| |||| | || |||||| ||| Sbjct 20649549 GAGGAACCCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 20649490 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || |||||| | | || | ||| ||||| || || | | Sbjct 20649489 ACATTCTCGCTTCCGCTTCG--TCCACCGC-CGCTCGCGCGGTTGCTTCCCC-CTAAGGC 20649434 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 20649433 GGAACGCTCCCCTACCGATGCATTTTGACA---TCCCACAGCTTCGGCAGATCGCTTA-G 20649378 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 20649377 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 20649319 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 20649318 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 20649259 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||||||||||||||||||||| Sbjct 20649258 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTTCCCTCTCG 20649210 Score = 226 bits (250), Expect = 7e-57 Identities = 302/409 (74%), Gaps = 18/409 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 20650408 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 20650349 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||||| | |||| | | |||||| |||| | || |||||| ||| Sbjct 20650348 GAGGAACCCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 20650289 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || |||||| | | || | ||| ||||| || || | | Sbjct 20650288 ACATTCTCGCTTCCGCTTCG--TCCACCGC-CGCTCGCGCGGTTGCTTCCCC-CTAAGGC 20650233 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 20650232 GGAACGCTCCCCTACCGATGCATTTTGACA---TCCCACAGCTTCGGCAGATCGCTTA-G 20650177 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 20650176 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 20650118 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| || || Sbjct 20650117 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCATTG 20650058 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||||||| ||||||||||||| Sbjct 20650057 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCTGGGATGTTTCCCTCTCG 20650009 >seq20 Length=30099736 Score = 206 bits (228), Expect = 6e-51 Identities = 282/383 (74%), Gaps = 18/383 (5%) Strand=Plus/Plus Query 27 GGACCCGACTCACCCAGGGCAGACAAACTTGACCCTGGAACCCTTGGATAATCGGCGGAC 86 || || ||||||||| | ||| ||| | | ||||||||||| | |||| | | Sbjct 16143780 GGCCCTGACTCACCCTCCGTGGACGAACCTTGCGGAGGAACCCTTGGGTTTTCGGGGCAT 16143839 Query 87 GGGATTCCCACCCGTCACA-CGCTACTCATGCCTGCATTCTCACT--CGCATCAACTCCA 143 |||||| |||| | || |||||| ||| ||||||| || ||| || |||| Sbjct 16143840 TGGATTCTCACCAATGTTTGCGTTACTCAAGCCGACATTCTCGCTTCCGCTTCG--TCCA 16143897 Query 144 CCACACAGTCACCCGGCAGCTTCACCACTGACACG--ACGCTCCCCTACCCAACCAC--- 198 || | | || | ||| ||||| || || | || ||||||||||||| | || Sbjct 16143898 CCGC-CGCTCGCGCGGTTGCTTCCCC-CTAAGGCGGAACGCTCCCCTACCGATGCATTTT 16143955 Query 199 -ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATC 257 ||| | ||||||||||||| ||| |||| |||||| | ||| ||||||| | | Sbjct 16143956 GACA---TCCCACAGCTTCGGCAGATCGCTTA-GCCCCGTT-CATCTTCGGCGCAAGAGC 16144010 Query 258 ACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCT 317 || || |||||||||||||||||||||||||||| |||||||||| | || |||||||| Sbjct 16144011 GCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCT 16144070 Query 318 GGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGA 377 || ||||| ||| | | || |||||| ||||||| || |||||||||||||||| Sbjct 16144071 GGCTGTCTCTGCACCCCTACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGG 16144130 Query 378 TGATCTGGGCTGTTTCCCTCTCG 400 ||||||||||||||||||||||| Sbjct 16144131 TGATCTGGGCTGTTTCCCTCTCG 16144153 >seq502 Length=7756 Score = 147 bits (162), Expect = 5e-33 Identities = 284/408 (70%), Gaps = 16/408 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| | || ||||||||||||| |||||| |||| || || ||| | | Sbjct 7306 CGACTACGCATTTCTGCCTCGCCTTAGGGGCCGACTAACCCTACGCCGATGAACGTTGCG 7365 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCC-GTCACACGCTACTCATGCCT 119 |||| |||||| ||||| | | | ||| | || ||||||||||| | Sbjct 7366 TAGGAAACCTTGGGCTTACGGCGACAGAGCCTTTCACTCTGTTTATCGCTACTCATGTCA 7425 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 |||||| |||| | || | ||||| || | | || || |||||| || ||| Sbjct 7426 GCATTCGCACTTCTGAT-ACCTCCAGCATGCTTT-ACAACACACCTTCACAGGCTTACAG 7483 Query 178 GACGCTCCCCTACC-CAACCACACAGGTTG----CCACAGCTTCGGCGGATAACT--TAA 230 ||||||||||||| | ||| || || ||||||||| || || | | Sbjct 7484 AACGCTCCCCTACCACTTGCACTTGCGTGCAAATCCGCAGCTTCGGT---TATCTGCTTA 7540 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| ||||| || |||| | | ||| || |||||||||||||||| ||||| || Sbjct 7541 GCCCCGTTACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAA 7600 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 || |||||||||| |||||||||||||| ||| | || |||| || ||| ||||| Sbjct 7601 GGGTGGCTGCTTCTAAGCCAACCTCCTGACTGTTTTAGCCTTCCCACTTCGTTTTCCACT 7660 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || || |||||| ||||||||| | |||||| ||||||||||| Sbjct 7661 TAG-CAGATATTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 7707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177161791488