Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq10 154 2e-35 seq19 131 3e-28 seq35426 109 9e-22 seq7 109 9e-22 >seq10 Length=25316904 Score = 154 bits (170), Expect = 2e-35 Identities = 205/285 (72%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 22353438 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 22353379 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | ||||||| Sbjct 22353378 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCAAG 22353319 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 22353318 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 22353259 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 22353258 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 22353199 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||| | |||| ||||||| | ||||||||| ||| || Sbjct 22353198 CCGCGGCTGATAGCACAGAGTTAGCTGATGCTTATTCCCCAGATA 22353154 >seq19 Length=26736940 Score = 131 bits (144), Expect = 3e-28 Identities = 202/288 (70%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| || ||||||| || |||| | | |||||||| ||| || Sbjct 18674635 CCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 18674694 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| |||| |||||||| || |||||| |||||| | ||||| ||| Sbjct 18674695 TCCTTCGTAGATCTGTAGATTTCACCCCTCCACACGAAATTCCACTCTCCTCTGTCTCAC 18674754 Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177 ||||| || ||||| || ||| || | ||| | |||||| | Sbjct 18674755 TCAAGTGAATTGGTTTCGAAAGCATTCCGCCACTTTTTGGCGAC-----TTTCACTTTCA 18674809 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237 || | | |||||||| ||||||||| |||| | | |||| | ||| |||||| || Sbjct 18674810 ACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCC 18674869 Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||| |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 18674870 CCGTTTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 18674917 >seq35426 Length=205 Score = 109 bits (120), Expect = 9e-22 Identities = 84/100 (84%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 191 CCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCG 250 |||||| | |||||| |||| | | |||||||||| ||||| ||| ||| |||||||| Sbjct 2 CCTACAGACGCTTTACGCCCAGTGATTCCGGATAACACTTGCATCCTCCGTCTTACCGCG 61 Query 251 GCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||| ||||||||| |||||||| ||||||| Sbjct 62 GCTGCTGGCACGGAGTTAGCCGATGCTTATTCTTCAGGTA 101 >seq7 Length=33617777 Score = 109 bits (120), Expect = 9e-22 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||||| Sbjct 403461 CCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTACC 403520 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||| ||||||||| ||||||||| ||| || Sbjct 403521 GCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 403563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828501224852