Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq3 268 1e-69 seq13 246 5e-63 seq3306 111 2e-22 >seq3 Length=28500605 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 20678402 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 20678343 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 20678342 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 20678283 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 20678282 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 20678223 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 20678222 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 20678163 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 20678162 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 20678130 Score = 242 bits (268), Expect = 6e-62 Identities = 220/273 (81%), Gaps = 3/273 (1%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 20652560 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 20652501 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 20652500 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 20652441 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 20652440 AGGGAAAG-TCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 20652382 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||| ||||| ||| || |||| |||||||||||||||||||||||| || | Sbjct 20652381 ACGTTCTGAACCGAGCTCACGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGAACAT 20652322 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || |||||||||| | || || ||||||||| Sbjct 20652321 CCTACAGCCCCAGGTGGCGAAGA-CCGACATCG 20652290 >seq13 Length=24101694 Score = 246 bits (272), Expect = 5e-63 Identities = 219/273 (80%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 17116885 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 17116826 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 17116825 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 17116766 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || | |||||| |||||| ||||||||||||||| || Sbjct 17116765 AGGGAAAGGTCCTCTCAATGCTCTAAAGCCCACACCGGATATGGACCGAACTGTCTCACG 17116706 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 | ||||| |||| ||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 17116705 ATGTTCTAAACCAAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 17116646 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| || ||||||| | || |||||||||||| Sbjct 17116645 ACTACAACCCCAGGTGGTGAAGAGCCGACATCG 17116613 >seq3306 Length=719 Score = 111 bits (122), Expect = 2e-22 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| ||||| |||||||| ||| || |||| |||| Sbjct 121 GCTTAGATGCTTTCAGCGGTTATCTCTTCCGCACTTAGCTACCCGGCGATGCCACTGGCG 62 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCC 134 ||||| ||| |||||||||| |||||| ||||||||||||||||| | ||||| || Sbjct 61 TGACAACCGGTACACCAGAGGTGCGTCCATTCCGGTCCTCTCGTACTAGGAACAGCCCC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780518528432