Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq11 84.2 4e-14 seq10 80.6 4e-13 seq12 77.0 5e-12 >seq11 Length=49703607 Score = 84.2 bits (92), Expect = 4e-14 Identities = 98/131 (75%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 100 GGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCC 159 |||| ||||| | ||||||| || || ||| ||||| ||||| ||||| || || | Sbjct 26939271 GGAAAGCTTCAT-GTGGAATATCAACAGAGCCAACTCGTTTCATACGTTTCTTCCCTTCT 26939329 Query 160 TTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGT 219 || || |||||||| ||||| ||| || ||| ||| || || || ||||| || || Sbjct 26939330 TTCTGTTTCTCAAGAAGCTTCTTCTTCCGAGTTATGTCTCCTCCATAACATTTTGCAAGC 26939389 Query 220 ACGTTCTTTCT 230 ||||||||||| Sbjct 26939390 ACGTTCTTTCT 26939400 >seq10 Length=25316904 Score = 80.6 bits (88), Expect = 4e-13 Identities = 96/129 (74%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 102 AAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCCTT 161 |||||||| | ||||||| || || || ||||| ||||| ||||| || || | || Sbjct 23633749 AAGGCTTCAT-GTGGAATATCAACAGAACCAACTCGTTTCATACGTTTCTTCCCTTCTTT 23633691 Query 162 TTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTAC 221 || |||||||| ||||| ||| || ||| ||| || || || ||||| || || || Sbjct 23633690 CTGTTTCTCAAGAAGCTTCTTCTTCCGAGTTATGTCTCCTCCATAACATTTTGCAAGCAC 23633631 Query 222 GTTCTTTCT 230 ||||||||| Sbjct 23633630 GTTCTTTCT 23633622 >seq12 Length=33044737 Score = 77.0 bits (84), Expect = 5e-12 Identities = 95/129 (74%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 102 AAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCCTT 161 || ||||| | ||||||| || || || ||||| ||||| ||||| || || | || Sbjct 29240402 AAAGCTTCGT-GTGGAATATCAACAGAACCAACTCGTTTCATACGTTTCTTCCCTTCTTT 29240344 Query 162 TTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTAC 221 || |||||||| ||||| ||| || ||| ||| || || || ||||| || || || Sbjct 29240343 CTGTTTCTCAAGAAGCTTCTTCTTCCGAGTTATGTCTCCTCCATAACATTTTGCAAGCAC 29240284 Query 222 GTTCTTTCT 230 ||||||||| Sbjct 29240283 GTTCTTTCT 29240275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 838088014592