Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq7 324 4e-86 seq10 304 4e-80 seq19 266 1e-68 seq4835 203 1e-49 seq35426 178 4e-42 >seq7 Length=33617777 Score = 324 bits (358), Expect = 4e-86 Identities = 274/335 (82%), Gaps = 3/335 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 403791 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 403732 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 403731 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 403672 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 403671 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 403612 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 |||||| |||||| | || ||| | | || ||||| |||||||||| || ||| Sbjct 403611 AGGCCTACGGGTCCTGAACTTCTTTTCCCAGAGAAGAAGCAATGACGGTATCTGGGGAAT 403552 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| |||||||||||||||||||||| ||| || ||||||||||| Sbjct 403551 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCG 403492 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492 |||| | | |||||||||| || |||||||| || Sbjct 403491 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTT 403458 >seq10 Length=25316904 Score = 304 bits (336), Expect = 4e-80 Identities = 276/345 (80%), Gaps = 7/345 (2%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 22352926 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 22352985 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 22352986 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 22353045 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 22353046 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 22353105 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGAT----AATGACGGTACTTGAGGA 395 |||||| |||||| | || | | | | || |||| | |||||| ||| || ||| Sbjct 22353106 AGGCCTACGGGTCCTGAACTTATTTTCCCA--GAAGTTCTGGAATGACAGTATCTGGGGA 22353163 Query 396 GGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATC 455 |||| | ||||||| |||| | ||||||||||||||| ||| || ||||||||| Sbjct 22353164 ATAAGCATCAGCTAACTCTGTGCTATCAGCCGCGGTAATACAGAGGATGCAAGCGTTATC 22353223 Query 456 CGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||| | | |||||||||| || |||||||| || ||||||| Sbjct 22353224 CGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 22353267 >seq19 Length=26736940 Score = 266 bits (294), Expect = 1e-68 Identities = 258/327 (79%), Gaps = 5/327 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| | | ||| |||| | || || Sbjct 18675144 ATTAGGTAGTTGGTTAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 18675085 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 18675084 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 18675025 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATG-AAGGC-CT 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || | ||||| | Sbjct 18675024 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAAGGCAAT 18674965 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||||| Sbjct 18674964 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 18674905 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| | Sbjct 18674904 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCAAGTGTTCTTCGGAATGA 18674845 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || |||||||||||| |||||| ||| Sbjct 18674844 CT-GGGCGTAAAGGGCACGTAGGCGGT 18674819 Score = 78.8 bits (86), Expect = 3e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 265 TCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAA 322 |||||||||||||||||||||||||| || | |||||||| ||||||||| | ||||| Sbjct 11307854 TCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAA 11307797 >seq4835 Length=563 Score = 203 bits (224), Expect = 1e-49 Identities = 207/265 (78%), Gaps = 5/265 (2%) Strand=Plus/Plus Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 || ||||| |||||| ||| |||||||||||| || |||| ||||| ||||| ||||| Sbjct 11 GGATGATCAGCCACACTGGGACTGAGACACGGCCCGGTCTCCCACGGGGGGCAGTAGTGG 70 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATG-AAGGC- 343 ||||| ||| ||||||||| |||||| ||| ||||| |||||||| || | ||||| Sbjct 71 GGAATCTTGGACAATGGGCGAAAGCCCGATTCAGCATTATCGCGTGAGTGAAGAAAGGCA 130 Query 344 CTTCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGC 401 | | | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||| Sbjct 131 ATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGC 190 Query 402 CCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAAT 461 ||||||||||| |||| ||||| ||||||||| ||| |||||| || ||| | ||||| Sbjct 191 CCCGGCTAACTCCGTGTCAGCAACCGCGGTAAAACGGGGGGGGCAAGTGTTCTTTGGAAT 250 Query 462 TACTGGGGCGTAAAGGGTGCGTAGG 486 | | |||||||||||| |||||| Sbjct 251 GA-TTGGGCGTAAAGGGCACGTAGG 274 >seq35426 Length=205 Score = 178 bits (196), Expect = 4e-42 Identities = 165/206 (80%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 285 GGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC 344 |||||| || | |||||||| ||||||||| | ||||| ||||||||| ||||| |||| Sbjct 205 GGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATACCGCGTGAGGGATGACGGCC 146 Query 345 TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGAT--AATGACG-GTACTTGAGGAGGAAGC 401 | |||| ||||| |||| | ||| ||| || ||||||| |||| ||| || |||| Sbjct 145 TATGGGTTGTAAACCTCTTTTTTCAGGGAGGAATCAATGACGTGTACCTGAAGAATAAGC 86 Query 402 CCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAAT 461 ||||||||| |||||||||||||||||||| ||| ||| || || |||||||||||| Sbjct 85 ATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGAGGATGCAAGTGTTATCCGGAAT 26 Query 462 TACTGGGGCGTAAAGGGTGCGTAGGT 487 ||| |||||||||| || |||||| Sbjct 25 CACT-GGGCGTAAAGCGTCTGTAGGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497042713088