Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24]
37,212 sequences; 641,356,059 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq7 324 4e-86
seq10 304 4e-80
seq19 266 1e-68
seq4835 203 1e-49
seq35426 178 4e-42
>seq7
Length=33617777
Score = 324 bits (358), Expect = 4e-86
Identities = 274/335 (82%), Gaps = 3/335 (1%)
Strand=Plus/Minus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
|||||||||||||||||||||| ||| || |||||||||||||| |||||||||| |
Sbjct 403791 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 403732
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
| |||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||
Sbjct 403731 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 403672
Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339
||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | ||
Sbjct 403671 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 403612
Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397
|||||| |||||| | || ||| | | || ||||| |||||||||| || |||
Sbjct 403611 AGGCCTACGGGTCCTGAACTTCTTTTCCCAGAGAAGAAGCAATGACGGTATCTGGGGAAT 403552
Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457
|||| ||||||||| |||||||||||||||||||||| ||| || |||||||||||
Sbjct 403551 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCG 403492
Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492
|||| | | |||||||||| || |||||||| ||
Sbjct 403491 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTT 403458
>seq10
Length=25316904
Score = 304 bits (336), Expect = 4e-80
Identities = 276/345 (80%), Gaps = 7/345 (2%)
Strand=Plus/Plus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
|||||||||||||||||||||| ||| || |||||||||||||| |||||||||| |
Sbjct 22352926 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 22352985
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
| |||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||
Sbjct 22352986 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 22353045
Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339
||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | ||
Sbjct 22353046 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 22353105
Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGAT----AATGACGGTACTTGAGGA 395
|||||| |||||| | || | | | | || |||| | |||||| ||| || |||
Sbjct 22353106 AGGCCTACGGGTCCTGAACTTATTTTCCCA--GAAGTTCTGGAATGACAGTATCTGGGGA 22353163
Query 396 GGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATC 455
|||| | ||||||| |||| | ||||||||||||||| ||| || |||||||||
Sbjct 22353164 ATAAGCATCAGCTAACTCTGTGCTATCAGCCGCGGTAATACAGAGGATGCAAGCGTTATC 22353223
Query 456 CGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
|||||| | | |||||||||| || |||||||| || |||||||
Sbjct 22353224 CGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 22353267
>seq19
Length=26736940
Score = 266 bits (294), Expect = 1e-68
Identities = 258/327 (79%), Gaps = 5/327 (2%)
Strand=Plus/Minus
Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227
||||| |||||||| |||||| |||| |||||| | | ||| |||| | || ||
Sbjct 18675144 ATTAGGTAGTTGGTTAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 18675085
Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287
||||| |||||| ||| |||||||||||| || ||||| ||||| |||||||||||||
Sbjct 18675084 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 18675025
Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATG-AAGGC-CT 345
||| ||| ||||||||| |||||| ||| |||||| |||||||| || | ||||| |
Sbjct 18675024 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAAGGCAAT 18674965
Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403
| | | |||||||||| || || | | ||| ||||| | ||| ||||| |||||||
Sbjct 18674964 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 18674905
Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463
||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| |
Sbjct 18674904 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCAAGTGTTCTTCGGAATGA 18674845
Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490
|| |||||||||||| |||||| |||
Sbjct 18674844 CT-GGGCGTAAAGGGCACGTAGGCGGT 18674819
Score = 78.8 bits (86), Expect = 3e-12
Identities = 52/58 (90%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 265 TCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAA 322
|||||||||||||||||||||||||| || | |||||||| ||||||||| | |||||
Sbjct 11307854 TCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAA 11307797
>seq4835
Length=563
Score = 203 bits (224), Expect = 1e-49
Identities = 207/265 (78%), Gaps = 5/265 (2%)
Strand=Plus/Plus
Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285
|| ||||| |||||| ||| |||||||||||| || |||| ||||| ||||| |||||
Sbjct 11 GGATGATCAGCCACACTGGGACTGAGACACGGCCCGGTCTCCCACGGGGGGCAGTAGTGG 70
Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATG-AAGGC- 343
||||| ||| ||||||||| |||||| ||| ||||| |||||||| || | |||||
Sbjct 71 GGAATCTTGGACAATGGGCGAAAGCCCGATTCAGCATTATCGCGTGAGTGAAGAAAGGCA 130
Query 344 CTTCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGC 401
| | | | |||||||||| || || | | ||| ||||| | ||| ||||| |||||
Sbjct 131 ATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGC 190
Query 402 CCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAAT 461
||||||||||| |||| ||||| ||||||||| ||| |||||| || ||| | |||||
Sbjct 191 CCCGGCTAACTCCGTGTCAGCAACCGCGGTAAAACGGGGGGGGCAAGTGTTCTTTGGAAT 250
Query 462 TACTGGGGCGTAAAGGGTGCGTAGG 486
| | |||||||||||| ||||||
Sbjct 251 GA-TTGGGCGTAAAGGGCACGTAGG 274
>seq35426
Length=205
Score = 178 bits (196), Expect = 4e-42
Identities = 165/206 (80%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 285 GGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC 344
|||||| || | |||||||| ||||||||| | ||||| ||||||||| ||||| ||||
Sbjct 205 GGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATACCGCGTGAGGGATGACGGCC 146
Query 345 TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGAT--AATGACG-GTACTTGAGGAGGAAGC 401
| |||| ||||| |||| | ||| ||| || ||||||| |||| ||| || ||||
Sbjct 145 TATGGGTTGTAAACCTCTTTTTTCAGGGAGGAATCAATGACGTGTACCTGAAGAATAAGC 86
Query 402 CCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAAT 461
||||||||| |||||||||||||||||||| ||| ||| || || ||||||||||||
Sbjct 85 ATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGAGGATGCAAGTGTTATCCGGAAT 26
Query 462 TACTGGGGCGTAAAGGGTGCGTAGGT 487
||| |||||||||| || ||||||
Sbjct 25 CACT-GGGCGTAAAGCGTCTGTAGGT 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497042713088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |