Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq10 264 3e-68 seq19 208 2e-51 seq4835 172 1e-40 seq12 158 3e-36 seq5 113 1e-22 seq37087 109 1e-21 seq35426 105 2e-20 seq7 104 6e-20 seq18 75.2 3e-11 >seq10 Length=25316904 Score = 264 bits (292), Expect = 3e-68 Identities = 303/405 (75%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| | ||||||| |||| | ||||||||||||||| ||| || ||| Sbjct 22353158 TGGGGAATAAGCATCAGCTAACTCTGTGCTATCAGCCGCGGTAATACAGAGGATGCAAGC 22353217 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 22353218 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 22353277 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 22353278 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTTGAGTACGGTAGGGGCA 22353337 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 22353338 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 22353397 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 22353398 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 22353457 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 22353458 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 22353516 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 22353517 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 22353561 Score = 87.8 bits (96), Expect = 4e-15 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 280 GAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAAT 339 |||||| ||||||| || ||||||||||||| ||||||| ||||||||||||| || Sbjct 22353746 GAAAGCTAGGGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGAT 22353805 Query 340 ACTAGGTGTCGGGGCGCAT-AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCAC 398 |||||| || | ||| || || | | || | | ||| ||||| ||||||| || | Sbjct 22353806 ACTAGGCGT-TGTGCGTATCAACCCATGCAGTTCTGTAGCTAACGCGTTAAGTATCCCGC 22353864 Query 399 CTGGGGAGTA 408 ||||||||| Sbjct 22353865 ATGGGGAGTA 22353874 >seq19 Length=26736940 Score = 208 bits (230), Expect = 2e-51 Identities = 252/340 (74%), Gaps = 10/340 (3%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 18674921 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCA 18674862 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||||||||||||||| |||||| ||| | || | ||| Sbjct 18674861 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 18674802 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | ||| |||||| ||||| | || || ||||| Sbjct 18674801 AAAGTC---GCCAAAAAGTGGCGGAATGCTTTCGAAACCAATTCA---CTTGAGTGAGAC 18674748 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||||||||| | ||| || |||||||| |||| | | |||||| ||| Sbjct 18674747 AGAGGAGAGTGGAATTTCGTGTGGAGGGGTGAAATCTACAGATCTACGAAGGAACGCCAA 18674688 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| |||| || ||| ||| || ||||||| |||||||| || Sbjct 18674687 AAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAA 18674628 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 | ||||||||||||||||||||||| |||||||||||||| Sbjct 18674627 CGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 18674588 >seq4835 Length=563 Score = 172 bits (190), Expect = 1e-40 Identities = 244/340 (72%), Gaps = 10/340 (3%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||| ||||| ||||||||| ||| |||||| Sbjct 176 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGTCAGCAACCGCGGTAAAACGGGGGGGGCA 235 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | ||||| | ||||||||||||| |||||| | | | || | ||| Sbjct 236 AGTGTTCTTTGGAATGATTGGGCGTAAAGGGCACGTAGGCGATGAATCGGGTTGAAAGTG 295 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | ||| |||||| |||| | || || ||||| Sbjct 296 AAAGTC---GCCAAAAAGTGGCGGAATGCTTTCAAAACCAATTCA---CTTGAGTGAGAC 349 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||||||||| | ||| || |||||||| |||| | | |||||| ||| Sbjct 350 AGAGGAGAGTGGAATTTCGTGTGGAGGGGTGAAATCTACAGATCTACGAAGGAACGCCAA 409 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| || |||| || ||| ||| || ||||||| ||||||||| | Sbjct 410 ATGCGAAGGCAACTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCAGA 469 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 | ||||||||||||||||||||||| ||| |||||||||| Sbjct 470 CGGGATTAGATACCCTGGTAGTCCATGCCATAAACGATGA 509 >seq12 Length=33044737 Score = 158 bits (174), Expect = 3e-36 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 179 GGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGT 238 |||||| |||||| | ||| |||||||||||||||||| || | | |||||||| Sbjct 10434628 GGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAAC 10434569 Query 239 GGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAAC 298 |||||| || |||||| | | |||||||||||| ||||||| ||||||| || Sbjct 10434568 GGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAAT 10434509 Query 299 AGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT 358 ||||||||||||| ||||||| ||||||||||||| |||||||| | | | ||| || Sbjct 10434508 GGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTAT 10434450 Query 359 -AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 10434449 CGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 10434399 >seq5 Length=34971402 Score = 113 bits (124), Expect = 1e-22 Identities = 129/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 239 GGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAAC 298 |||||| || |||||| | | |||||||||||| ||||||| ||||||| || Sbjct 22668609 GGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAAT 22668550 Query 299 AGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT 358 ||||||||||||| ||||||| ||||||||||||| |||||||| | | | ||| || Sbjct 22668549 GGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTAT 22668491 Query 359 -AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 22668490 CGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 22668440 >seq37087 Length=200 Score = 109 bits (120), Expect = 1e-21 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 198 GTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGG 257 ||| || |||||||| |||| | | |||||| ||| |||||||| ||| |||| Sbjct 7 GTGGAGGGGTGAAATCTACAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGG 66 Query 258 ACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTA 317 || ||| ||| || ||||||| |||||||| ||| |||||||||||||||||| Sbjct 67 GTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACGGGATTAGATACCCTGGTA 126 Query 318 GTCCACGCCGTAAACGATGA 337 ||||| |||||||||||||| Sbjct 127 GTCCATGCCGTAAACGATGA 146 >seq35426 Length=205 Score = 105 bits (116), Expect = 2e-20 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||| ||| || |||| ||||||||| |||||||||||||||||||| ||| ||| || Sbjct 101 TACCTGAAGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGAGGATGC 42 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGT 101 || |||||||||||| ||||||||||||| || |||||| Sbjct 41 AAGTGTTATCCGGAATCACTGGGCGTAAAGCGTCTGTAGGT 1 >seq7 Length=33617777 Score = 104 bits (114), Expect = 6e-20 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 403559 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 403500 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTT 106 |||||||||||| | ||||||||||| || |||||||| || Sbjct 403499 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTT 403458 >seq18 Length=20869551 Score = 75.2 bits (82), Expect = 3e-11 Identities = 89/118 (75%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 292 AGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGG 351 ||| || ||||||||||| | ||||||| ||||||||||||| |||||||| || | Sbjct 9824150 AGCGAATGGGATTAGATACACCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGT-TG 9824208 Query 352 GGCGCAT-AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| || | | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 9824209 TGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 9824266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202752265216