Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq432 320 3e-85 seq11 320 3e-85 seq2 320 3e-85 seq10 214 3e-53 seq12588 210 4e-52 seq9 187 5e-45 >seq432 Length=8256 Score = 320 bits (354), Expect = 3e-85 Identities = 263/316 (83%), Gaps = 13/316 (4%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | ||| | || ||| |||||| Sbjct 5706 GAACGAGACCTCAGCCTGCTAACTAGCTACGTGGAGGCATCCCTTCACGG----CCGGCT 5761 Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||||||| | | | || | | |||||||||||||||||||||||||||||| Sbjct 5762 TCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGAT 5821 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| Sbjct 5822 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTCA-CACC 5880 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||||| Sbjct 5881 TTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 5939 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||| Sbjct 5940 ATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 5999 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 6000 GTCCCTGCCCTTTGTA 6015 >seq11 Length=49703607 Score = 320 bits (354), Expect = 3e-85 Identities = 263/316 (83%), Gaps = 13/316 (4%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | ||| | || ||| |||||| Sbjct 37452127 GAACGAGACCTCAGCCTGCTAACTAGCTACGTGGAGGCATCCCTTCACGG----CCGGCT 37452182 Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||||||| | | | || | | |||||||||||||||||||||||||||||| Sbjct 37452183 TCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGAT 37452242 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| Sbjct 37452243 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTCA-CACC 37452301 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||||| Sbjct 37452302 TTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 37452360 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||| Sbjct 37452361 ATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 37452420 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 37452421 GTCCCTGCCCTTTGTA 37452436 Score = 320 bits (354), Expect = 3e-85 Identities = 263/316 (83%), Gaps = 13/316 (4%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | ||| | || ||| |||||| Sbjct 37463747 GAACGAGACCTCAGCCTGCTAACTAGCTACGTGGAGGCATCCCTTCACGG----CCGGCT 37463802 Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||||||| | | | || | | |||||||||||||||||||||||||||||| Sbjct 37463803 TCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGAT 37463862 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| Sbjct 37463863 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTCA-CACC 37463921 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||||| Sbjct 37463922 TTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 37463980 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||| Sbjct 37463981 ATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 37464040 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 37464041 GTCCCTGCCCTTTGTA 37464056 Score = 188 bits (208), Expect = 1e-45 Identities = 179/225 (80%), Gaps = 13/225 (6%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | ||| | || ||| |||||| Sbjct 17420858 GAACGAGACCTCAGCCTGCTAACTAGCTACGTGGAGGCATCCCTTCACGG----CCGGCT 17420803 Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||||||| | | | || | | |||||||||||||||||||||||||||||| Sbjct 17420802 TCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGAT 17420743 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| Sbjct 17420742 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTCA-CACC 17420684 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGG 237 ||||||| ||| | |||||||||| | ||| | ||||| ||| Sbjct 17420683 TTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGG 17420640 >seq2 Length=29139806 Score = 320 bits (354), Expect = 3e-85 Identities = 263/316 (83%), Gaps = 13/316 (4%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | ||| | || ||| |||||| Sbjct 12801478 GAACGAGACCTCAGCCTGCTAACTAGCTACGTGGAGGCATCCCTTCACGG----CCGGCT 12801533 Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||||||| | | | || | | |||||||||||||||||||||||||||||| Sbjct 12801534 TCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGAT 12801593 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| Sbjct 12801594 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTCA-CACC 12801652 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||||| Sbjct 12801653 TTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 12801711 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||| Sbjct 12801712 ATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 12801771 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 12801772 GTCCCTGCCCTTTGTA 12801787 Score = 269 bits (298), Expect = 5e-70 Identities = 220/263 (84%), Gaps = 3/263 (1%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 || || |||||||||||||||| | | | | | | ||||| |||||| ||||||| || Sbjct 24968393 GCTGGATTCTTAGAGGGACTATGGCCGTTTATACCAAGGAAGGTTGAGGTAATAACAAGT 24968452 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 ||||||||||||||||||| ||||||||| ||||||||||||||| | |||| |||| Sbjct 24968453 CTGTGATGCCCTTAGATGTCCTGGGCCGCCCGCGCGCTACACTGATGTATTCAACAAGTT 24968512 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 || ||||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| Sbjct 24968513 CA-CACCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGAT 24968570 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||| ||| ||||||||||||||| | ||||||||||| ||||||||| ||||| Sbjct 24968571 CATTGCAATTGTTGGTCTTCAACGAGGAATTCGTAGTAAGCGCGAGTCATCAGCTCGCGT 24968630 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| ||||||| ||||||||||| Sbjct 24968631 TGACTACGTCCTTGCCCTTTGTA 24968653 >seq10 Length=25316904 Score = 214 bits (236), Expect = 3e-53 Identities = 182/218 (83%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 |||||||||||||||||||||| | | | || | | ||||||||||||||||||||||| Sbjct 24329608 GCCGGCTTCTTAGAGGGACTATGGTCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGT 24329667 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 ||||||| ||||||||||||||||| ||| ||||||||||||| | | ||||||||| Sbjct 24329668 TTGTGATGTCCTTAGATGTTCTGGGCTGCA--CGCGCTACACTGATATATTCAACGAGTT 24329725 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 || ||||||||||| ||| | |||||||||| | ||| | ||||| | |||||||| Sbjct 24329726 CA-CACCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGAT-GGGATAGAT 24329782 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTA 283 ||||| |||| ||| ||||||| ||||||| ||||||| Sbjct 24329783 CATTGGAATTGTTGGTCTTCAATGAGGAATTCCTAGTA 24329820 >seq12588 Length=344 Score = 210 bits (232), Expect = 4e-52 Identities = 163/192 (85%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 |||||||||||||||||||||||||||||||||| | ||||||| ||| ||||| Sbjct 1 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCATTCAACGAGCCTATC--CTTGG 58 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 | | | | | |||||||||| | || || ||||| |||||||||| |||||||||| Sbjct 59 CTGAGAAGCCCGGGTAATCTT-TGAATCTGCATCGTGATGGGGATAGATTATTGCAATTA 117 Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 || ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 118 TTAGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGATTACGTCC 177 Query 317 CTGCCCTTTGTA 328 |||||||||||| Sbjct 178 CTGCCCTTTGTA 189 >seq9 Length=38094978 Score = 187 bits (206), Expect = 5e-45 Identities = 199/261 (76%), Gaps = 4/261 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAG-GCAATAACAGGTCTGTG 130 |||||||||||||| | |||| | || | | | | || ||||||||||||||||| Sbjct 34253593 CTTCTTAGAGGGACAAGCGGCGCTCGCAGCCGCACGAAACAGAGCAATAACAGGTCTGTG 34253534 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA--- 187 |||||||||||||| | |||||||||||| |||||||||| | || || | | Sbjct 34253533 ATGCCCTTAGATGTCCGGGGCCGCACGCGTGCTACACTGAAGTGGTCATCGTGCATACTG 34253474 Query 188 TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 | ||| ||| |||| ||||||| | | || | | ||||| ||||||| | ||| Sbjct 34253473 TTTCCTGCTCCGAAAGGAGTGGGTAACCGCTTGAACCCATTTCGTGATGGGGATTGGGCA 34253414 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 ||| ||||||||| | | |||||||||| || |||||||| | ||||| ||| |||||| Sbjct 34253413 TTGTAATTATTGCCCATGAACGAGGAATTCCCAGTAAGCGTGAGTCATTAGCTTGCGTTG 34253354 Query 308 ATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||| Sbjct 34253353 ATTACGTCCCTGCCCTTTGTA 34253333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946847527936