Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq502 331 3e-88 seq5 179 1e-42 seq3 179 1e-42 seq20 152 2e-34 seq11 104 8e-20 seq18 75.2 4e-11 >seq502 Length=7756 Score = 331 bits (366), Expect = 3e-88 Identities = 224/250 (90%), Gaps = 1/250 (0%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||||||| |||||| | |||||||||||||||||||||||||| |||||| |||| Sbjct 485 CGAGTCCGAATAGGGCGTCTAGTCGCTGGGTGTAGACCCGAAACCAGACGATCTATCCAT 426 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 ||||||| ||||||| |||||||| ||||||| ||||||||||||| |||||||| | Sbjct 425 GGCCAGGTTGAAGGTTGGGTAACACCAACTGGAGGACCGAACCCACTAACGTTGAAAAGT 366 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 365 TAGGGGATGAGCTGTGGATAGGGGTGAAAGGCTAAACAAGTCTGGAAATAGCTGGTTCTC 306 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGG 240 ||||||||||||||||||||||||| ||| |||| | ||||||||||||||||||||| Sbjct 305 CCCGAAAACTATTTAGGTAGTGCCTCGAGTCTCACTACAGGGGGTAGAGCACTGTTATGG 246 Query 241 CTAGGGGGTC 250 |||||||||| Sbjct 245 CTAGGGGGTC 236 >seq5 Length=34971402 Score = 179 bits (198), Expect = 1e-42 Identities = 395/583 (68%), Gaps = 38/583 (7%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| | ||| Sbjct 22664736 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCTATG 22664677 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||||||| Sbjct 22664676 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAAAATC 22664617 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 22664616 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 22664557 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 22664556 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 22664502 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287 || ||| | | ||| ||||||| | |||||||| |||| | Sbjct 22664501 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 22664444 Query 288 CATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336 | ||| | || | || |||||| |||| | |||| | | | | Sbjct 22664443 CCTCAAAATAACTGGGGTCAAGGTCGGCCAGTGAGACGGTGGGGGATAAGCTTCATCGTC 22664384 Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396 |||||| || | || || | ||||||||||||| ||||||| ||| ||| | | || Sbjct 22664383 GAGAGGGAAACAGCCCAGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AA 22664326 Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456 || || | ||| ||||||| |||| ||| || | |||||||||| | || ||||| Sbjct 22664325 GGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGA 22664267 Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGT 516 |||||||| |||||||| ||||| || ||| || || | |||| |||| | Sbjct 22664266 GTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGAT 22664208 Query 517 CTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 || ||||||| ||||||| | | ||| |||||||||||||| Sbjct 22664207 CTGCCGAAGCTGTGGGAT-GTCAAAATGCATCGGTAGGGGAGC 22664166 >seq3 Length=28500605 Score = 179 bits (198), Expect = 1e-42 Identities = 395/583 (68%), Gaps = 38/583 (7%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| | ||| Sbjct 20648858 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCTATG 20648917 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||||||| Sbjct 20648918 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAAAATC 20648977 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 20648978 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 20649037 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 20649038 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 20649092 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287 || ||| | | ||| ||||||| | |||||||| |||| | Sbjct 20649093 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 20649150 Query 288 CATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336 | ||| | || | || |||||| |||| | |||| | | | | Sbjct 20649151 CCTCAAAATAACTGGGGTCAAGGTCGGCCAGTGAGACGGTGGGGGATAAGCTTCATCGTC 20649210 Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396 |||||| || | || || | ||||||||||||| ||||||| ||| ||| | | || Sbjct 20649211 GAGAGGGAAACAGCCCAGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AA 20649268 Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456 || || | ||| ||||||| |||| ||| || | |||||||||| | || ||||| Sbjct 20649269 GGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGA 20649327 Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGT 516 |||||||| |||||||| ||||| || ||| || || | |||| |||| | Sbjct 20649328 GTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGAT 20649386 Query 517 CTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 || ||||||| ||||||| | | ||| |||||||||||||| Sbjct 20649387 CTGCCGAAGCTGTGGGAT-GTCAAAATGCATCGGTAGGGGAGC 20649428 Score = 107 bits (118), Expect = 6e-21 Identities = 162/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395 ||||||| || | || || | ||||||||||||| ||||||| ||| | | | | | Sbjct 20650009 CGAGAGGGAAACATCCCAGATCACCAGCTAAGGCCCCTAAATGACCGCTCAATGATA--A 20650066 Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455 | || || | ||| ||||||| |||| ||| || | |||||||||| | || |||| Sbjct 20650067 AGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCC-TTGAAAG 20650125 Query 456 AGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTG 515 ||||||||| |||||||| ||||| || ||| || || | |||| |||| Sbjct 20650126 AGTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGA 20650184 Query 516 TCTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 ||| ||||||| ||||||| | | ||| |||||||||||||| Sbjct 20650185 TCTGCCGAAGCTGTGGGAT-GTCAAAATGCATCGGTAGGGGAGC 20650227 >seq20 Length=30099736 Score = 152 bits (168), Expect = 2e-34 Identities = 377/563 (67%), Gaps = 38/563 (7%) Strand=Plus/Minus Query 22 GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTA 81 ||| ||| | | ||||| || | |||||||| | ||| | | ||||||| | ||| Sbjct 16144485 GTCACTGCTTATGGACCCAAACCTGGGTGATCTATCGATGACGAAGATGAAGCTTGGGTG 16144426 Query 82 ACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAG 141 | || |||||||| ||||| ||| |||||||||||| || ||||||| ||||| ||| Sbjct 16144425 AAACTAAGTGGAGGTCAGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAG 16144366 Query 142 GGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGT 201 |||||||| || | | ||| || ||||||||||| |||||| || ||| Sbjct 16144365 GGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTTCCCGAAATGCGTTAAGGCGCA 16144306 Query 202 GCCTCAAGTATCAC----CATCG-GGGGTAGAGCACTGTTATGGCTAGGGGGTC-ATTGC 255 || ||| | || |||| |||||| ||||||||| || ||| | | || Sbjct 16144305 GC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGCCGCGAGAGC 16144251 Query 256 GACTTACCAAACCATTGCAAACTCCGAATGCG--------CATCAGTTTTACCGCGGG-- 305 | ||||||| | |||||||| |||| | | ||| | || | || Sbjct 16144250 GG--TACCAAATCGAGGCAAACTCTGAATACTAGATATGACCTCAAAATAACTGGGGTCA 16144193 Query 306 ---------AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGAC 356 |||||| |||| | |||| | | | ||||||| || | || || Sbjct 16144192 AGGTCGGCCAGTGAGACGGTGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCAGAT 16144133 Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416 | ||||||||||||| ||||||| ||| ||| | | || || || | ||| |||| Sbjct 16144132 CACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTAGGGGTGCAGAGAC 16144075 Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476 ||| |||| ||| || | |||||||||| | || ||||||||||||| |||||||| | Sbjct 16144074 AGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTCACTGAT 16144016 Query 477 CGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCA 536 |||| || ||| || || | |||| |||| ||| ||||||| ||||||| Sbjct 16144015 CGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGATCTGCCGAAGCTGTGGGAT-G 16143958 Query 537 TTTATATG-ATCGGTAGGGGAGC 558 | | ||| |||||||||||||| Sbjct 16143957 TCAAAATGCATCGGTAGGGGAGC 16143935 >seq11 Length=49703607 Score = 104 bits (114), Expect = 8e-20 Identities = 136/187 (73%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| || | |||||||||| | |||||||| | ||| Sbjct 16791433 CGAGTCTTCATAGGGCAATTGTCAATGCTTATAGACCCGAACCTGGGTGATCTATCTATG 16791492 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||| ||| | ||| | | ||||||||| |||| | | |||||||||||| Sbjct 16791493 ACCAGGATAAAGCTTGGGTGAAATTAAGTGGAGGTCCAAACCGAGTGATGTTGAAAAATC 16791552 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || |||| || ||||| ||||||||| | || | | ||| ||| |||||||||||| Sbjct 16791553 AGCGGATAAGTTGTGGTTAGGGGTGATATGCCACTCGAACCCGGAGCTAGCTGGTTCTC- 16791611 Query 182 CCGAAAA 188 || |||| Sbjct 16791612 CCAAAAA 16791618 >seq18 Length=20869551 Score = 75.2 bits (82), Expect = 4e-11 Identities = 65/81 (80%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 108 AATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAA 167 ||||||||||||| || |||| || ||||| || |||||||| |||| | ||| || Sbjct 18316123 AATGTTGAAAAATCAGCGGATAAGTTGTGGTTAAGGGTGAAATGCTACTCGAACCCAGAG 18316064 Query 168 ATAGCTGGTTCTCTCCGAAAA 188 |||||||||||| ||||||| Sbjct 18316063 CTAGCTGGTTCTCCCCGAAAA 18316043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1688971266048