Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24]
37,212 sequences; 641,356,059 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq502 273 4e-71
seq5 132 9e-29
seq10 125 1e-26
seq11 114 2e-23
seq3 102 1e-19
>seq502
Length=7756
Score = 273 bits (302), Expect = 4e-71
Identities = 214/253 (85%), Gaps = 2/253 (1%)
Strand=Plus/Minus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
||||||||||||||||||||||||||| | |||||||||||||||| ||||| ||||| |
Sbjct 1103 AGTGCACATGGTGGATGCCTTGGCGATCATAGGCGATGAAGGACGTTGTAGCCTGCGAAA 1044
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120
|||| ||||||| ||||||| |||||||||| |||| ||||||||||||||||| |
Sbjct 1043 AGCTACGGGGAGCTGGCAAACAAGCTTTGATCCGTAGATGTCCGAATGGGGAAACCCACC 984
Query 121 CCTTT-GGGTCATTGCATGCTGAATACATAGGTATG-CAAAGCGAACGCGGCGAACTGAA 178
| ||| ||| || | ||||||||||||||| | | | |||||| ||| ||||||||
Sbjct 983 CTTTTAGGGGTATCCCGTGCTGAATACATAGGCACGAGGAGGCGAACCCGGAGAACTGAA 924
Query 179 ACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238
||||||||||| | | ||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 923 ACATCTAAGTACCCGGAGGAAAAGAAATCAACCGAGATTCCGAAAGTAGCGGCGAGCGAA 864
Query 239 ATGGGATGAGCCT 251
| ||| |||||
Sbjct 863 CTCGGAACAGCCT 851
>seq5
Length=34971402
Score = 132 bits (146), Expect = 9e-29
Identities = 178/243 (73%), Gaps = 11/243 (5%)
Strand=Plus/Minus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||||
Sbjct 22665361 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 22665302
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | |||||| ||||| |||||| || |||| ||||
Sbjct 22665301 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTTAACCT-----TTTGA-- 22665250
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| |||
Sbjct 22665249 -ACTGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 22665192
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 22665191 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 22665132
Query 249 CCT 251
|||
Sbjct 22665131 CCT 22665129
>seq10
Length=25316904
Score = 125 bits (138), Expect = 1e-26
Identities = 182/251 (73%), Gaps = 17/251 (7%)
Strand=Plus/Minus
Query 5 CACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAA--- 61
|| ||||||||| ||| ||| || || ||| |||| ||||||| |||| ||
Sbjct 22347053 CATATGGTGGATACCTAGGCACCTAGAGACGAGGAAGAGCGTAGTAA---GCGACAAAAT 22346997
Query 62 GCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCC 121
||| |||||||| | ||| | | | |||||| ||||| || ||| || ||||
Sbjct 22346996 GCTTCGGGGAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCAAATAGGTTAACCT---- 22346942
Query 122 CTTTGGGTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAAC 180
|||| | ||| |||||||| ||| || | |||| || ||| |||||||||||||
Sbjct 22346941 -TTTGA---ACTGC-TGCTGAATCCATGGGGAAGCAAGAGACAACCTGGCGAACTGAAAC 22346887
Query 181 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 240
|||| |||||| || |||||||| ||| | ||||||| ||||| ||||||||||||
Sbjct 22346886 ATCTTAGTAGCCAGAGAAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAAT 22346827
Query 241 GGGATGAGCCT 251
|||| |||||
Sbjct 22346826 GGGAGCAGCCT 22346816
>seq11
Length=49703607
Score = 114 bits (126), Expect = 2e-23
Identities = 175/245 (71%), Gaps = 11/245 (4%)
Strand=Plus/Plus
Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67
|| |||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||
Sbjct 16790806 ATTGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGAGACGAAATGCTTCG 16790865
Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127
|||||| | ||| | | | |||| | ||||| |||||| || |||| ||||
Sbjct 16790866 GGGAGTT-GAAAATAAGCATAGATCTGGAGATTCCCGAATAGGTTAACCT-----TTTGA 16790919
Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186
| ||| |||||||| || || | |||| || ||| ||||||||||||||| | |
Sbjct 16790920 ---ACTGC-TGCTGAATCTATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATTTTA 16790975
Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246
|||| ||||||||||| ||| | ||||||| ||||| ||||||||||||||||
Sbjct 16790976 GTAGGGAAAGGAAAAGAAAGCAAAAGCGATTCCCCTAGTAGCGGCGAGCGAAATGGGAGC 16791035
Query 247 AGCCT 251
|||||
Sbjct 16791036 AGCCT 16791040
>seq3
Length=28500605
Score = 102 bits (112), Expect = 1e-19
Identities = 156/218 (72%), Gaps = 11/218 (5%)
Strand=Plus/Plus
Query 35 GATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGGAGTGAGCAAACACACTTTGATCCG 94
|| ||||||||||||| ||| | ||| |||| ||| | ||| | | | ||| |
Sbjct 20648258 GAGGAAGGACGTAGTAAGCGACGAAATGCTTCGGGAAGTT-GAAAATAAGCGTAGATTCA 20648316
Query 95 CAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACATAGGTAT 154
||||| |||||| || |||| |||| | ||| |||||||| ||| || |
Sbjct 20648317 GAGATTCCCGAATAGGTTAACCT-----TTTGA---ACTGC-TGCTGAATCCATGGGCAG 20648367
Query 155 GCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGA 213
|||| || ||| ||||||||||||||||| |||||| ||||||||||| ||| |
Sbjct 20648368 GCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGC 20648427
Query 214 GATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251
|||||| ||||| |||||| |||||||| |||||
Sbjct 20648428 AATTCCCGTAGTAGCAGCGAGCAAAATGGGAGCAGCCT 20648465
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 918058244992
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |