Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq502 273 4e-71 seq5 132 9e-29 seq10 125 1e-26 seq11 114 2e-23 seq3 102 1e-19 >seq502 Length=7756 Score = 273 bits (302), Expect = 4e-71 Identities = 214/253 (85%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 ||||||||||||||||||||||||||| | |||||||||||||||| ||||| ||||| | Sbjct 1103 AGTGCACATGGTGGATGCCTTGGCGATCATAGGCGATGAAGGACGTTGTAGCCTGCGAAA 1044 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| ||||||| ||||||| |||||||||| |||| ||||||||||||||||| | Sbjct 1043 AGCTACGGGGAGCTGGCAAACAAGCTTTGATCCGTAGATGTCCGAATGGGGAAACCCACC 984 Query 121 CCTTT-GGGTCATTGCATGCTGAATACATAGGTATG-CAAAGCGAACGCGGCGAACTGAA 178 | ||| ||| || | ||||||||||||||| | | | |||||| ||| |||||||| Sbjct 983 CTTTTAGGGGTATCCCGTGCTGAATACATAGGCACGAGGAGGCGAACCCGGAGAACTGAA 924 Query 179 ACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 ||||||||||| | | ||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 923 ACATCTAAGTACCCGGAGGAAAAGAAATCAACCGAGATTCCGAAAGTAGCGGCGAGCGAA 864 Query 239 ATGGGATGAGCCT 251 | ||| ||||| Sbjct 863 CTCGGAACAGCCT 851 >seq5 Length=34971402 Score = 132 bits (146), Expect = 9e-29 Identities = 178/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 22665361 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 22665302 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| |||| Sbjct 22665301 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTTAACCT-----TTTGA-- 22665250 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 22665249 -ACTGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 22665192 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 22665191 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 22665132 Query 249 CCT 251 ||| Sbjct 22665131 CCT 22665129 >seq10 Length=25316904 Score = 125 bits (138), Expect = 1e-26 Identities = 182/251 (73%), Gaps = 17/251 (7%) Strand=Plus/Minus Query 5 CACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAA--- 61 || ||||||||| ||| ||| || || ||| |||| ||||||| |||| || Sbjct 22347053 CATATGGTGGATACCTAGGCACCTAGAGACGAGGAAGAGCGTAGTAA---GCGACAAAAT 22346997 Query 62 GCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCC 121 ||| |||||||| | ||| | | | |||||| ||||| || ||| || |||| Sbjct 22346996 GCTTCGGGGAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCAAATAGGTTAACCT---- 22346942 Query 122 CTTTGGGTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAAC 180 |||| | ||| |||||||| ||| || | |||| || ||| ||||||||||||| Sbjct 22346941 -TTTGA---ACTGC-TGCTGAATCCATGGGGAAGCAAGAGACAACCTGGCGAACTGAAAC 22346887 Query 181 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 240 |||| |||||| || |||||||| ||| | ||||||| ||||| |||||||||||| Sbjct 22346886 ATCTTAGTAGCCAGAGAAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAAT 22346827 Query 241 GGGATGAGCCT 251 |||| ||||| Sbjct 22346826 GGGAGCAGCCT 22346816 >seq11 Length=49703607 Score = 114 bits (126), Expect = 2e-23 Identities = 175/245 (71%), Gaps = 11/245 (4%) Strand=Plus/Plus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 || |||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| || Sbjct 16790806 ATTGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGAGACGAAATGCTTCG 16790865 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 |||||| | ||| | | | |||| | ||||| |||||| || |||| |||| Sbjct 16790866 GGGAGTT-GAAAATAAGCATAGATCTGGAGATTCCCGAATAGGTTAACCT-----TTTGA 16790919 Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186 | ||| |||||||| || || | |||| || ||| ||||||||||||||| | | Sbjct 16790920 ---ACTGC-TGCTGAATCTATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATTTTA 16790975 Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246 |||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| Sbjct 16790976 GTAGGGAAAGGAAAAGAAAGCAAAAGCGATTCCCCTAGTAGCGGCGAGCGAAATGGGAGC 16791035 Query 247 AGCCT 251 ||||| Sbjct 16791036 AGCCT 16791040 >seq3 Length=28500605 Score = 102 bits (112), Expect = 1e-19 Identities = 156/218 (72%), Gaps = 11/218 (5%) Strand=Plus/Plus Query 35 GATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGGAGTGAGCAAACACACTTTGATCCG 94 || ||||||||||||| ||| | ||| |||| ||| | ||| | | | ||| | Sbjct 20648258 GAGGAAGGACGTAGTAAGCGACGAAATGCTTCGGGAAGTT-GAAAATAAGCGTAGATTCA 20648316 Query 95 CAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACATAGGTAT 154 ||||| |||||| || |||| |||| | ||| |||||||| ||| || | Sbjct 20648317 GAGATTCCCGAATAGGTTAACCT-----TTTGA---ACTGC-TGCTGAATCCATGGGCAG 20648367 Query 155 GCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGA 213 |||| || ||| ||||||||||||||||| |||||| ||||||||||| ||| | Sbjct 20648368 GCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGC 20648427 Query 214 GATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||| ||||| |||||| |||||||| ||||| Sbjct 20648428 AATTCCCGTAGTAGCAGCGAGCAAAATGGGAGCAGCCT 20648465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918058244992