Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq9 713 0.0 seq20 531 2e-148 seq10 78.8 3e-12 >seq9 Length=38094978 Score = 713 bits (790), Expect = 0.0 Identities = 480/532 (90%), Gaps = 7/532 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 34267299 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 34267358 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 34267359 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCCTCCGCCCGGATC 34267418 Query 127 GGCCCGC-GAAGGA--CCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCAT 183 ||||| | |||| | |||| ||| ||| || | || | ||| |||| |||| Sbjct 34267419 GGCCCACCGAAGCAAGCCTTGGGACCAAAAACAGGG-GTTGTACCCCATCTCCGATTCAC 34267477 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || ||||||||| |||| ||| ||||||||||||||||||||||| | |||||||| Sbjct 34267478 GGAGTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGGA---GCTCCCAC 34267534 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 34267535 TTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 34267594 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 34267595 TTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAG 34267654 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 34267655 ACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 34267714 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 34267715 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 34267774 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 34267775 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATC 34267826 Score = 702 bits (778), Expect = 0.0 Identities = 476/528 (90%), Gaps = 7/528 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 34248809 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 34248868 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 34248869 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCCTCCGCCCGGATC 34248928 Query 127 GGCCCGC-GAAG-GAC-CTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCAT 183 | ||||| |||| || ||| ||| ||| || | || | || |||| |||| Sbjct 34248929 GACCCGCCGAAGCGAGTCTTGGGACCAAAAACAGGG-GTTGTACCCCGCCTCCGATTCAC 34248987 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || ||||||||| |||| ||| ||||||||||||||||||||||| | |||||||| Sbjct 34248988 GGAGTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGGA---GCTCCCAC 34249044 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 34249045 TTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 34249104 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 34249105 TTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAG 34249164 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 34249165 ACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 34249224 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 34249225 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 34249284 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 34249285 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAA 34249332 Score = 499 bits (552), Expect = 1e-138 Identities = 291/301 (97%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 ||||||||||||| |||||||||||| ||| ||||||||||| |||||||||||||||| Sbjct 34245336 GGCTCCCACTTATGCTACACCTCTCATGTCTCTTCACAAAGTCAGACTAGAGTCAAGCTC 34245395 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 34245396 AACAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 34245455 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 34245456 AGATAGTAGTTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 34245515 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 34245516 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 34245575 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 34245576 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCAT 34245635 Query 535 C 535 | Sbjct 34245636 C 34245636 Score = 453 bits (502), Expect = 4e-125 Identities = 266/276 (96%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 260 AAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGAT 319 |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 34268023 AAGTTATTTCACAAAGTTGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGAT 34268082 Query 320 TCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA 379 || ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 34268083 TCTGCCAAGCCCGTTCCCTTAGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGTGGGAA 34268142 Query 380 TCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAG 439 | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 34268143 TATCGTTAATCCATTCATGCGCGTCACTAATTAGATGACAAGGCATTTGGCTACCTTAAG 34268202 Query 440 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATT 499 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 34268203 AGAGTCATAGTTACTCCCACCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATT 34268262 Query 500 CAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||| | |||| Sbjct 34268263 CAGAGCACTGGGCAGAAATCACATTGCGTTAGCATC 34268298 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| ||| |||| ||||||||||||||||||| Sbjct 34244897 CTTTTGCTCTACGCGAGGTTTCTGTCCTCACTGAGCTGGCCTTAGGACACCTGCGTTACC 34244956 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||||||| ||||||||| |||||||||| |||||||||||| Sbjct 34244957 TTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACAATGTC 34245003 >seq20 Length=30099736 Score = 531 bits (588), Expect = 2e-148 Identities = 391/451 (87%), Gaps = 7/451 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | |||||||| |||||||||| Sbjct 26469316 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACTCCTGCGTTATC 26469375 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||| |||||||||||||||||||| |||||||||| || |||||||| Sbjct 26469376 TTTTAACAGATGTGCTGCCCCAGCCAAACTCCCCACGTGACAATGTCCTCCGCCCGGATC 26469435 Query 127 GGCCCGC-GAAGG--ACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCAT 183 | || || |||| ||||| ||| ||| || | || | || |||| |||| Sbjct 26469436 GACCTGCCGAAGCGAACCTTGGGACCAAAAACAGGG-GTTGTACCCCGCCTCCGATTCAC 26469494 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || |||| |||| |||| ||| ||||||||||||||||||||||| | |||||||| Sbjct 26469495 GGAGTAAGCAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGGA---GCTCCCAC 26469551 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 26469552 TTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 26469611 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 26469612 TTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 26469671 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 | | ||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| Sbjct 26469672 ACATGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCTTTTATTAGATGATGAGGC 26469731 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 ||||||||||||||||||||||||||||||| Sbjct 26469732 ATTTGGCTACCTTAAGAGAGTCATAGTTACT 26469762 Score = 136 bits (150), Expect = 1e-29 Identities = 83/88 (94%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 448 AGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCAC 507 |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 26471643 AGTTACTCCCGCTGTTTACCCGCGCTTGATTGAATTTCTTCACTTTGACATTCAGAGCAC 26471702 Query 508 TGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||| || | |||| Sbjct 26471703 TGGGCAGAAATCACATTGTGTTAGCATC 26471730 >seq10 Length=25316904 Score = 78.8 bits (86), Expect = 3e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 74 AGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCC 131 ||||||||||||||| ||||||||||||||||||||| || || ||||||||| ||| Sbjct 18334741 AGATGTGCCGCCCCAACCAAACTCCCCACCTGACAATATCCTCCGCCCGGATCGACCC 18334684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634591509376