Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq3 149 2e-33 >seq3 Length=28500605 Score = 149 bits (164), Expect = 2e-33 Identities = 162/211 (77%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||||| |||| | ||||||| | || |||||||||| ||||||| ||||| Sbjct 20651041 ATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCG 20650983 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | Sbjct 20650982 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCA 20650923 Query 470 CTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCT 529 | |||||||| | ||| ||| || || | | |||| | |||||||| Sbjct 20650922 CCGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTAACCT 20650869 Query 530 TCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 ||| |||| ||||||||||||| || |||| Sbjct 20650868 TCCGGCACTGGGCAGGCGTCAGCCCCCATAC 20650838 Score = 125 bits (138), Expect = 2e-26 Identities = 378/572 (66%), Gaps = 35/572 (6%) Strand=Plus/Minus Query 12 GTCTCGCAGTCAAGCTCCCTTGTGCACTTA-CACTCACCACCTGATTGCCAACCAGGCTG 70 |||| |||||||| ||||||| ||| |||| || || | || || | | ||| Sbjct 20652138 GTCTTGCAGTCAAACTCCCTTCTGC-CTTAGCATTCGAGGGCCAATCTCCGTCTGGCCTG 20652080 Query 71 AGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACC 130 ||| |||||||| ||||| |||||| |||||||||| | | |||||| ||||| | Sbjct 20652079 AGGAAACCTTTGCACGCCTACGTTACCTTTTGGGAGGCCTAT-GCCCCATAGAAACTGTC 20652021 Query 131 CACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATCCACTACGGTC 187 ||| | |||||||| | || || || |||| ||||| || | | | Sbjct 20652020 TACCTGAGACTGTCCCTTGGCATGTAGGTCCTGACACAAGATTAGAATTCTAGCTCTTCC 20651961 Query 188 AGAGTGGTATTTCAACAACGACTC-------CACAACCACTAGCGTGGCCGCATCATAGT 240 |||||||||| ||| | | ||| | | || | || | || | | || | | Sbjct 20651960 AGAGTGGTATCTCACTGATGGCTCGCCCCCCCCCCTCCCCGAGAGGGGGC-CTTCTTTGC 20651902 Query 241 CTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298 || ||||||| || | || || || | || ||||| ||| | | ||||||| | Sbjct 20651901 CTTCCACCTAAGCTGCGCAGGAAAAGCCCAAAA--CCAATCCCAGGGAACAGTGAAGCTT 20651844 Query 299 CCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357 | |||||||| |||| | || | | ||||||| || | | ||||||| Sbjct 20651843 CATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCAC 20651784 Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTTA 416 || |||| | |||| || | || |||||||||| || |||| ||| |||||||| Sbjct 20651783 CGAGCCTCTCTCCGAGATAGT-GCCCAGATCGTTACGCCTTTTGTGCGGGTTGGAACTTA 20651725 Query 417 CCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCG--------TTT 468 |||||||||||||||||| ||||||||| ||||||||||| ||| || || Sbjct 20651724 CCCGACAAGGAATTTCGCCACCTTAGGACCGTTATAGTTACAGCCGTCGTTCACCANTTC 20651665 Query 469 ACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACC 528 || |||||||| | ||| ||| || || | | |||| | ||||||| Sbjct 20651664 ACCGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTAACC 20651611 Query 529 TTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 |||| |||| ||||||||||||| || |||| Sbjct 20651610 TTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 20651579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701766502912