Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24]
37,212 sequences; 641,356,059 total letters
Query= AAMG01002207.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
seq3 149 2e-33
>seq3
Length=28500605
Score = 149 bits (164), Expect = 2e-33
Identities = 162/211 (77%), Gaps = 8/211 (4%)
Strand=Plus/Minus
Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409
||||||||| |||| | ||||||| | || |||||||||| ||||||| |||||
Sbjct 20651041 ATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCG 20650983
Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 20650982 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCA 20650923
Query 470 CTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCT 529
| |||||||| | ||| ||| || || | | |||| | ||||||||
Sbjct 20650922 CCGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTAACCT 20650869
Query 530 TCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560
||| |||| ||||||||||||| || ||||
Sbjct 20650868 TCCGGCACTGGGCAGGCGTCAGCCCCCATAC 20650838
Score = 125 bits (138), Expect = 2e-26
Identities = 378/572 (66%), Gaps = 35/572 (6%)
Strand=Plus/Minus
Query 12 GTCTCGCAGTCAAGCTCCCTTGTGCACTTA-CACTCACCACCTGATTGCCAACCAGGCTG 70
|||| |||||||| ||||||| ||| |||| || || | || || | | |||
Sbjct 20652138 GTCTTGCAGTCAAACTCCCTTCTGC-CTTAGCATTCGAGGGCCAATCTCCGTCTGGCCTG 20652080
Query 71 AGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACC 130
||| |||||||| ||||| |||||| |||||||||| | | |||||| ||||| |
Sbjct 20652079 AGGAAACCTTTGCACGCCTACGTTACCTTTTGGGAGGCCTAT-GCCCCATAGAAACTGTC 20652021
Query 131 CACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATCCACTACGGTC 187
||| | |||||||| | || || || |||| ||||| || | | |
Sbjct 20652020 TACCTGAGACTGTCCCTTGGCATGTAGGTCCTGACACAAGATTAGAATTCTAGCTCTTCC 20651961
Query 188 AGAGTGGTATTTCAACAACGACTC-------CACAACCACTAGCGTGGCCGCATCATAGT 240
|||||||||| ||| | | ||| | | || | || | || | | || | |
Sbjct 20651960 AGAGTGGTATCTCACTGATGGCTCGCCCCCCCCCCTCCCCGAGAGGGGGC-CTTCTTTGC 20651902
Query 241 CTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298
|| ||||||| || | || || || | || ||||| ||| | | ||||||| |
Sbjct 20651901 CTTCCACCTAAGCTGCGCAGGAAAAGCCCAAAA--CCAATCCCAGGGAACAGTGAAGCTT 20651844
Query 299 CCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357
| |||||||| |||| | || | | ||||||| || | | |||||||
Sbjct 20651843 CATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCAC 20651784
Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTTA 416
|| |||| | |||| || | || |||||||||| || |||| ||| ||||||||
Sbjct 20651783 CGAGCCTCTCTCCGAGATAGT-GCCCAGATCGTTACGCCTTTTGTGCGGGTTGGAACTTA 20651725
Query 417 CCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCG--------TTT 468
|||||||||||||||||| ||||||||| ||||||||||| ||| || ||
Sbjct 20651724 CCCGACAAGGAATTTCGCCACCTTAGGACCGTTATAGTTACAGCCGTCGTTCACCANTTC 20651665
Query 469 ACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACC 528
|| |||||||| | ||| ||| || || | | |||| | |||||||
Sbjct 20651664 ACCGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTAACC 20651611
Query 529 TTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560
|||| |||| ||||||||||||| || ||||
Sbjct 20651610 TTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 20651579
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1701766502912
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |