Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq7 127 4e-27 seq10 116 8e-24 seq19 114 3e-23 seq4835 75.2 2e-11 >seq7 Length=33617777 Score = 127 bits (140), Expect = 4e-27 Identities = 195/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 403523 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 403571 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| || |||||||||| | | |||||| ||||| ||| ||||| Sbjct 403572 GC------TTCTTCTCTGGGAAAAGAAGTTCAGGACCCGTAGG-CCTTCTACCTCCACGC 403624 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 403625 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 403684 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 403685 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 403744 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 403745 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 403783 >seq10 Length=25316904 Score = 116 bits (128), Expect = 8e-24 Identities = 146/199 (73%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||| ||||| | | |||||| ||||| ||| ||||| | | ||| |||| || Sbjct 22353131 AAAATAAGTTCAGGACCCGTAGG-CCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTT 22353073 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||||||||||||| ||| ||||||||||| Sbjct 22353072 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 22353013 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 22353012 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 22352953 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 22352952 GCCTCACCAACTAGCTAAT 22352934 >seq19 Length=26736940 Score = 114 bits (126), Expect = 3e-23 Identities = 160/223 (72%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 82 AAAGAAGTTTACAATCCGTAGAACCTT-CATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 ||||| ||||||| | | | |||| | || |||||| | | ||||| || | || Sbjct 18674946 AAAGAGCTTTACAAGCGGCATTGCCTTTCTTCACTCACGCGATATTGCTGGATCGGGCTT 18675005 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| |||| ||||| |||||||||| ||||| ||||| || ||||||||||| Sbjct 18675006 TCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAG 18675065 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||| ||| | ||| |||| | |||| ||| ||| || Sbjct 18675066 TCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTT 18675125 Query 261 ACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCG 303 ||| || |||||||||| ||||| | |||| ||| || Sbjct 18675126 ACCTAACCAACTACCTAATACTACGCAGGCTCATCAAACAGCG 18675168 >seq4835 Length=563 Score = 75.2 bits (82), Expect = 2e-11 Identities = 96/131 (73%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 82 AAAGAAGTTTACAATCCGTAGAACCTT-CATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 ||||| ||||||| | | | |||| | || |||||| | |||| || | || Sbjct 151 AAAGAGCTTTACAAGCGGCATTGCCTTTCTTCACTCACGCGATAATGCTGAATCGGGCTT 92 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| |||| ||||| |||| ||||| ||||| |||| || ||||||||||| Sbjct 91 TCGCCCATTGTCCAAGATTCCCCACTACTGCCCCCCGTGGGAGACCGGGCCGTGTCTCAG 32 Query 201 TTCCAATGTGG 211 | ||| ||||| Sbjct 31 TCCCAGTGTGG 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068402278144