Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq29042 120 5e-25 seq9 107 3e-21 seq22790 86.0 1e-14 seq20 80.6 4e-13 seq2920 77.0 5e-12 >seq29042 Length=229 Score = 120 bits (132), Expect = 5e-25 Identities = 108/133 (81%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || ||| || |||||||| ||||| || |||| || || | Sbjct 76 GTACGAGAGGAACTGTTGA-TTCGGA-TAATTGGTATTTGCCCTTGGCTGAAAAGCCAAT 133 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| | ||||||||||||||||||||||||| |||||||| ||| | Sbjct 134 GGGGCGAAGCTACCATCCGTTGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 193 Query 121 GAACGGGGTGATT 133 ||||| | |||| Sbjct 194 GAACGCGACGATT 206 >seq9 Length=38094978 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 34248486 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 34248429 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 34248428 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 34248369 Query 121 GAA 123 ||| Sbjct 34248368 GAA 34248366 >seq22790 Length=261 Score = 86.0 bits (94), Expect = 1e-14 Identities = 88/111 (79%), Gaps = 3/111 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || | |||| |||||||| | || ||||||| || || | Sbjct 182 GTACGAGAGGAACCGCCGAGT-CAGA-TAATTGGTAAT-GCCCTTGTCTGAAAAGACAAT 126 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAA 111 | ||||||||| |||||| | | ||| ||||||||||||||||||||| Sbjct 125 GGGGCGAAGCTAACATCTGTAGTCTAATGACTGAACGCCTCTAAGTCAGAA 75 >seq20 Length=30099736 Score = 80.6 bits (88), Expect = 4e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 57 CAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCAT 116 ||||| |||||||||||| | ||||||||||| |||||||| ||||||||||||||| Sbjct 29070227 CAGTGGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCTTCTAAGTCAGAATCCGG 29070286 Query 117 GCCAGAA 123 || |||| Sbjct 29070287 GCTAGAA 29070293 >seq2920 Length=791 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || ||| ||| || | ||| |||| ||| | Sbjct 717 GTACGAGAGGAACCGCAGG-TTCGGACAAAT-GGTACATGTGCCTGCTCGACCGAGCAAT 660 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | ||| |||| | || | |||||||| |||||||||||||||||||||||| Sbjct 659 GGCACGACGCTATCGTCCGAGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818904685568