Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq432 625 9e-177 seq11 625 9e-177 seq2 625 9e-177 seq9 295 2e-77 seq101 138 3e-30 seq32587 77.0 1e-11 >seq432 Length=8256 Score = 625 bits (692), Expect = 9e-177 Identities = 451/513 (88%), Gaps = 12/513 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | ||||||||| |||| |||||||||||||||||| Sbjct 4900 GTACTCATTCCAATTACCAGACTCGAAAGAGCCCGGTATTGTTATTTATTGTCACTACCT 4841 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4840 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 4781 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| Sbjct 4780 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTACCACCATGGTA 4721 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 4720 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCA 4661 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 | ||||||||||||| ||| |||||| |||||||| || |||| | | || | Sbjct 4660 CAAAGGCCATGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAGAGCCCG 4603 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 4602 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 4543 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| ||||| || ||| |||||| |||| |||||||| Sbjct 4542 AGCTCTAGAATTACTACGGTTATCCGAGTAGT-AGTTACCATCAAACAAACTATAACTGA 4484 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 4483 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACACATGCATGGCT 4424 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 4423 TAATCTTTGAGACAAGCATATGACTACTGGCAG 4391 >seq11 Length=49703607 Score = 625 bits (692), Expect = 9e-177 Identities = 451/513 (88%), Gaps = 12/513 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | ||||||||| |||| |||||||||||||||||| Sbjct 17421664 GTACTCATTCCAATTACCAGACTCGAAAGAGCCCGGTATTGTTATTTATTGTCACTACCT 17421723 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17421724 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 17421783 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| Sbjct 17421784 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTACCACCATGGTA 17421843 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 17421844 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCA 17421903 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 | ||||||||||||| ||| |||||| |||||||| || |||| | | || | Sbjct 17421904 CAAAGGCCATGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAGAGCCCG 17421961 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 17421962 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 17422021 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| ||||| || ||| |||||| |||| |||||||| Sbjct 17422022 AGCTCTAGAATTACTACGGTTATCCGAGTAGT-AGTTACCATCAAACAAACTATAACTGA 17422080 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 17422081 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACACATGCATGGCT 17422140 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 17422141 TAATCTTTGAGACAAGCATATGACTACTGGCAG 17422173 Score = 625 bits (692), Expect = 9e-177 Identities = 451/513 (88%), Gaps = 12/513 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | ||||||||| |||| |||||||||||||||||| Sbjct 37462941 GTACTCATTCCAATTACCAGACTCGAAAGAGCCCGGTATTGTTATTTATTGTCACTACCT 37462882 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 37462881 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 37462822 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| Sbjct 37462821 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTACCACCATGGTA 37462762 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 37462761 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCA 37462702 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 | ||||||||||||| ||| |||||| |||||||| || |||| | | || | Sbjct 37462701 CAAAGGCCATGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAGAGCCCG 37462644 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 37462643 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 37462584 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| ||||| || ||| |||||| |||| |||||||| Sbjct 37462583 AGCTCTAGAATTACTACGGTTATCCGAGTAGT-AGTTACCATCAAACAAACTATAACTGA 37462525 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 37462524 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACACATGCATGGCT 37462465 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 37462464 TAATCTTTGAGACAAGCATATGACTACTGGCAG 37462432 >seq2 Length=29139806 Score = 625 bits (692), Expect = 9e-177 Identities = 451/513 (88%), Gaps = 12/513 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | ||||||||| |||| |||||||||||||||||| Sbjct 12800672 GTACTCATTCCAATTACCAGACTCGAAAGAGCCCGGTATTGTTATTTATTGTCACTACCT 12800613 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12800612 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 12800553 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| Sbjct 12800552 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTACCACCATGGTA 12800493 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 12800492 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCA 12800433 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 | ||||||||||||| ||| |||||| |||||||| || |||| | | || | Sbjct 12800432 CAAAGGCCATGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAGAGCCCG 12800375 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 12800374 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 12800315 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| ||||| || ||| |||||| |||| |||||||| Sbjct 12800314 AGCTCTAGAATTACTACGGTTATCCGAGTAGT-AGTTACCATCAAACAAACTATAACTGA 12800256 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 12800255 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACACATGCATGGCT 12800196 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 12800195 TAATCTTTGAGACAAGCATATGACTACTGGCAG 12800163 Score = 598 bits (662), Expect = 1e-168 Identities = 445/513 (87%), Gaps = 12/513 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||| |||||||||| |||| | ||||||||| |||| |||||||||||||||||| Sbjct 24960512 GTACTCCTTCCAATTACCAGACTCGAAAGAGCCCAGTATTGTTATTTATTGTCACTACCT 24960453 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 24960452 CCCCGTGTCAGGATTGGGTAATTTGCGTACCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 24960393 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||| |||||||||||||||||||||||| | | ||||||| ||||||||| Sbjct 24960392 TCTCAGGCTCTCTCTCCGGAATCGAACCCTAATTCTCTATCACCCGTTACCACCATGGTA 24960333 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 24960332 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCA 24960273 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 | ||||||||||||| ||| |||||| |||||||| || |||| | | || | Sbjct 24960272 CAAAGGCCATGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAGAGCCCG 24960215 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 24960214 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 24960155 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| ||||| || ||| |||||| |||| |||||||| Sbjct 24960154 AGCTCTAGAATTACTACGGTTATCCGAGTAGT-AGTTACCATCAAACAAACTATAACTGA 24960096 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 24960095 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACACATGCATGGCT 24960036 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 24960035 TAATCTTTGAGACAAGCATATGACTACTGGCAG 24960003 Score = 82.4 bits (90), Expect = 2e-13 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||| ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 12802634 CTTACACATGCATGACTTAATCTTTGAGACAAGCATATGACTACTGGCAG 12802585 >seq9 Length=38094978 Score = 295 bits (326), Expect = 2e-77 Identities = 235/280 (84%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||||| | || ||| |||| || |||| ||||| | |||||||| Sbjct 34254721 GTACTCATTCCAATTACGGGGCCTCAATAGAGTCCCGTATTGTTATTTTTCGTCACTACA 34254780 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 34254781 TCCCCGTACTGGGATTGTGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGT 34254840 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 34254841 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTACAACCATGGT 34254900 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| || ||||||||||| |||||||| ||||| |||| || ||||| |||| Sbjct 34254901 AGGCGCATAACCTACCATCGACAGTTGATAAGGCAGTTGCTTGAGGGATACATCGTCGGC 34254960 Query 240 TCA-AGGCCATGCGATTCGTTAAGTTATTATGAATCACCA 278 ||| ||||||| ||||| | | ||||||| || ||| || Sbjct 34254961 TCAGAGGCCATACGATTTGCTCAGTTATTCAGAGTCATCA 34255000 Score = 187 bits (206), Expect = 8e-45 Identities = 135/155 (87%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACG 404 ||||||||||||||||||||||||| |||||||||||| || | | |||| | ||| Sbjct 34255154 CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAAAAAAGAA-TATCCGAGGAACC 34255212 Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 |||||||||||||||||||||||| |||||||| |||| | | | |||||||||||| Sbjct 34255213 GTAACTGATTTAATGAGCCATTCGCGGTTTCACTTTATAAACAGTATGTACTTAGACATG 34255272 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACT 499 ||||||||||||||||||||||||||||||||||| Sbjct 34255273 CATGGCTTAATCTTTGAGACAAGCATATGACTACT 34255307 >seq101 Length=45910 Score = 138 bits (152), Expect = 3e-30 Identities = 92/101 (91%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACAT 463 ||||||||||||||||||||||||||||||||| || | ||| || ||||||| |||| Sbjct 7605 ATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACACAT 7664 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| ||||||||||||||||||||||||||||||| Sbjct 7665 GCATGGCTTGATCTTTGAGACAAGCATATGACTACTGGCAG 7705 >seq32587 Length=215 Score = 77.0 bits (84), Expect = 1e-11 Identities = 45/47 (96%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGG 501 |||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 169 CTTACACATGCATGGCGTAATCTTTGAGACAAGCATATGACTACTGG 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509837949952