Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4 168 5e-37 seq9 165 6e-36 seq6 165 6e-36 >seq4 Length=30110606 Score = 168 bits (186), Expect = 5e-37 Identities = 371/549 (68%), Gaps = 14/549 (3%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| ||||||||||| | || || || ||| | || ||||| Sbjct 6029982 ATGTACAAGAAAGCCGAAGCATCCTTCTGGACCGCCGAAGAAGTAGATCTATCTCAAGAC 6029923 Query 61156 ATGAATGACTGGGAGCGT----TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTT 61211 | ||||||||| | | ||| ||| |||| || ||||| ||||| || | Sbjct 6029922 AACCGCGACTGGGAGAACAGCCTCAACGA-CGGCGAACGCCACTTCATCAAACACGTCCT 6029864 Query 61212 GGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCA 61271 || ||||||||||| || ||||| ||||| |||||| | ||||||| | Sbjct 6029863 CGCCTTCTTTGCCGCGTCAGACGGAATCGTGCTAGAGAATCTCGCCTCACGTTTCATGTC 6029804 Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331 || || ||||| |||||||||||| |||||||| |||||||| || || ||||| | Sbjct 6029803 CGATGTCCAAGTCTCGGAGGCGCGTGCCTTCTACGGATTCCAGATCGCGATTGAGAACAT 6029744 Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGA 61391 |||||| |||||||||||| | ||| ||||||| ||||||| || || | || Sbjct 6029743 CCACTCCGAGATGTACAGTCTCCTCCTCGATACTTACATCAAAGACAACAAAGAGAGAGA 6029684 Query 61392 ACGATTGTTCAATGCCATCGAGACGATACC-GGCG--GTGAAGCGGAAAGCGGATTGGGC 61448 | | ||| || || || || || || ||| | ||| |||||| | ||||| Sbjct 6029683 CCATCTCTTCCGCGCGATTGAAACCATCCCTTGCGTCGCGAA---GAAAGCTCAGTGGGC 6029627 Query 61449 CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGT 61508 | || |||||| || | | | || || | ||||||| | | || || || Sbjct 6029626 GATGAAATGGATC-GAAGGATCTCAG--ACCTTCGCTGAACGAATCATAGCTTTCGCTTG 6029570 Query 61509 GGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGG 61568 ||||| ||| | || ||| ||| || | ||||||| ||| | |||||||| || Sbjct 6029569 CGTCGAAGGTATCTTCTTCTCCGGAAGCTTCTGCTCAATCTTCTGGCTTAAGAAACGAGG 6029510 Query 61569 ACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTG 61628 ||| ||||| || || || ||| || || |||| || || ||||| || | || || Sbjct 6029509 ACTCATGCCTGGCCTTACTTTCTCAAACGAACTGATCTCGCGTGACGAAGGTCTACACTG 6029450 Query 61629 TGATTTTGC 61637 || || || Sbjct 6029449 CGACTTCGC 6029441 >seq9 Length=38094978 Score = 165 bits (182), Expect = 6e-36 Identities = 551/846 (65%), Gaps = 21/846 (2%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| ||||||||||| | || || || ||| | || ||||| Sbjct 5074366 ATGTACAAGAAAGCCGAAGCATCCTTCTGGACTGCCGAAGAAGTAGATCTATCACAAGAC 5074307 Query 61156 ATGAATGACTGGGA-----GCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGT 61210 | |||||||| || | | ||| ||| |||| || ||||| ||||| || Sbjct 5074306 AACCGCGACTGGGAAAACAGCCTCAA-CGA-CGGCGAACGCCACTTCATCAAACACGTCC 5074249 Query 61211 TGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGC 61270 | || ||||| ||||| || ||||| ||||| |||||| | |||||| | Sbjct 5074248 TCGCCTTCTTCGCCGCGTCAGACGGAATCGTGTTAGAGAATCTCGCTTCCCGTTTCATGT 5074189 Query 61271 AGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATG 61330 || || ||||| |||||||||||| ||||||||| |||||||| || || |||||| Sbjct 5074188 CCGATGTCCAAGTCTCGGAGGCGCGTGCTTTCTACGGATTCCAGATCGCGATTGAGAATA 5074129 Query 61331 TCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTG 61390 ||||||| |||||||||||| | ||| ||||||| ||||||| || || | | Sbjct 5074128 TCCACTCCGAGATGTACAGTCTCCTCCTCGATACTTACATCAAAGACAATAAAGAGAGAG 5074069 Query 61391 AACGATTGTTCAATGCCATCGAGACGATACC-GGCG--GTGAAGCGGAAAGCGGATTGGG 61447 | | | ||| || || || || || || ||| | ||| |||||| | |||| Sbjct 5074068 ACCATCTCTTCCGCGCGATTGAAACCATCCCTTGCGTCGCGAA---GAAAGCCCAGTGGG 5074012 Query 61448 CCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGG 61507 | | | |||||| | | | | || || | ||||||| | | || || || Sbjct 5074011 CTATGACATGGATCGACGG---ATCTCAAACCTTCGCTGAACGAATCATCGCTTTCGCTT 5073955 Query 61508 TGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTG 61567 ||||| ||| | || ||| ||| || | ||||||| ||| | |||||||| | Sbjct 5073954 GCGTCGAAGGTATCTTCTTCTCCGGAAGCTTCTGCTCAATCTTCTGGCTTAAGAAACGAG 5073895 Query 61568 GACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATT 61627 | || ||||| || || || ||| || || |||| || || ||||| || | || | Sbjct 5073894 GTCTCATGCCTGGCCTTACTTTCTCAAACGAACTGATCTCGCGTGACGAAGGTCTACACT 5073835 Query 61628 GTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTG 61687 | || || ||| | || | | ||||| || | | | || ||||| | Sbjct 5073834 GCGACTTCGCTTGCCTTCTCT--ACACGCT-CCTCAACACGAAGCTGAGCGAAGAGCGCG 5073778 Query 61688 TGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGC 61747 || ||| || | || ||||| ||||| ||| ||| || ||||| | | Sbjct 5073777 TGAAGTCGATCGTGTGCGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTC 5073718 Query 61748 CCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCG 61807 | | | | | || ||||| ||| | ||| ||||||||||| ||||| || | Sbjct 5073717 CATGCGCGTTGGTTGGGATGAACCGTGATTTGATGAGTCAGTATATTGAGTTTGTAGCGG 5073658 Query 61808 ACCGTCTGTT-GGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGAT 61866 | | || || ||| ||||||| | | | | || | || ||||| |||||| Sbjct 5073657 ATAGGCTTTTGGGTGCGCTTGGGTACG-GGAAGGTGTACGGTGTGAGTAACCCTTTTGAT 5073599 Query 61867 TTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGAC 61926 | ||||| | || ||||| | || ||||| || || ||||||||||| || ||||| Sbjct 5073598 TGGATGGAACTTATCTCGCTTCAAGGGAAGACTAACTTCTTCGAGAAACGCGTTGGCGAT 5073539 Query 61927 TATCAA 61932 || ||| Sbjct 5073538 TACCAA 5073533 >seq6 Length=26391736 Score = 165 bits (182), Expect = 6e-36 Identities = 206/281 (73%), Gaps = 5/281 (2%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| ||||||||||| | || || || ||| | || ||||| Sbjct 4051553 ATGTACAAGAAAGCCGAAGCATCCTTCTGGACCGCCGAAGAAGTAGATCTATCTCAAGAC 4051494 Query 61156 ATGAATGACTGGGAGCGT----TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTT 61211 | ||||||||| | | ||| ||| |||| || ||||| ||||| || | Sbjct 4051493 AACCGCGACTGGGAGAACAGCCTCAACGA-CGGCGAACGCCACTTCATCAAACACGTCCT 4051435 Query 61212 GGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCA 61271 || ||||| ||||| || ||||| ||||| |||||| | |||||| | Sbjct 4051434 CGCCTTCTTCGCCGCGTCAGACGGAATCGTGTTAGAGAATCTCGCTTCCCGTTTCATGTC 4051375 Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331 || || ||||| |||||||||||| ||||||||| |||||||| || || |||||| | Sbjct 4051374 CGATGTCCAAGTCTCGGAGGCGCGTGCTTTCTACGGATTCCAGATCGCGATTGAGAATAT 4051315 Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 |||||| |||||||||||| | ||| ||||||| ||||||| Sbjct 4051314 CCACTCCGAGATGTACAGTCTCCTCCTCGATACTTACATCA 4051274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397387694463680