Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq6 89.7 7e-13 seq4 89.7 7e-13 seq9 84.2 3e-11 >seq6 Length=26391736 Score = 89.7 bits (98), Expect = 7e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 162607 GCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACA 162666 |||| || ||| || | ||||||||||| | ||| | || |||| ||||| || Sbjct 14508656 GCCTGTAACGGAATCTTGTTCAATCACGAGTCACCGCGCCGTGGTGAGAACTTCGTGACC 14508597 Query 162667 CGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATCTACAACTT 162726 | |||||| |||||||| | || | || || || || || | || ||| Sbjct 14508596 AGGAAGATCACAAGAGCCTTGGGAAGGATCAAGGTTGGTCTGCAGAGGAAGCTCTTCCTT 14508537 Query 162727 GGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGG 162786 || || | | || | | ||||||||| ||| ||||| || ||||| |||||| Sbjct 14508536 GGGAATTTGCAGGCGGCAAGGGACTGGGGATTCGCAGGGGACTATGTGGAGGCAATGTGG 14508477 Query 162787 TTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAAC 162830 |||||||| ||||||||||||||||| ||||| || | ||||| Sbjct 14508476 TTGATGCTGCAGCAAGAGAAGCCAGACGATTACGTTGTTGCAAC 14508433 >seq4 Length=30110606 Score = 89.7 bits (98), Expect = 7e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 162607 GCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACA 162666 |||| || ||| || | ||||||||||| | ||| | || |||| ||||| || Sbjct 17828552 GCCTGTAACGGAATCTTGTTCAATCACGAGTCACCGCGCCGTGGTGAGAACTTCGTGACC 17828493 Query 162667 CGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATCTACAACTT 162726 | |||||| |||||||| | || | || || || || || | || ||| Sbjct 17828492 AGGAAGATCACAAGAGCCTTGGGAAGGATCAAGGTTGGTCTGCAGAGGAAGCTCTTCCTT 17828433 Query 162727 GGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGG 162786 || || | | || | | ||||||||| ||| ||||| || ||||| |||||| Sbjct 17828432 GGGAATTTGCAGGCGGCAAGGGACTGGGGATTCGCAGGGGACTATGTGGAGGCAATGTGG 17828373 Query 162787 TTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAAC 162830 |||||||| ||||||||||||||||| ||||| || | ||||| Sbjct 17828372 TTGATGCTGCAGCAAGAGAAGCCAGACGATTACGTTGTTGCAAC 17828329 >seq9 Length=38094978 Score = 84.2 bits (92), Expect = 3e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 162607 GCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACA 162666 |||| || ||| || | ||||||||||| | ||| | || |||| ||||| || Sbjct 21716178 GCCTGTAACGGAATCTTGTTCAATCACGAGTCACCGCGCCGTGGTGAGAACTTCGTGACC 21716119 Query 162667 CGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATCTACAACTT 162726 | |||||| |||||||| | || | || || || || || | || ||| Sbjct 21716118 AGGAAGATCACAAGAGCCTTGGGAAGGATCAAGGTTGGTCTGCAGAGGAAGCTCTTCCTT 21716059 Query 162727 GGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGG 162786 || || | | || | | || |||||| ||| ||||| || ||||| |||||| Sbjct 21716058 GGGAATTTGCAGGCGGCAAGGGATTGGGGATTCGCAGGGGACTATGTGGAGGCAATGTGG 21715999 Query 162787 TTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAAC 162830 |||||||| ||||||||||||||||| ||||| || | ||||| Sbjct 21715998 TTGATGCTGCAGCAAGAGAAGCCAGACGATTACGTTGTTGCAAC 21715955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691137567753120