Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 5e-14 seq19 84.2 8e-11 >seq1 Length=23241285 Score = 95.1 bits (104), Expect = 5e-14 Identities = 248/374 (66%), Gaps = 21/374 (6%) Strand=Plus/Minus Query 159431 AACTTTGGAATAATCTTTTCTGGATACTGGTAAGGACCGTAGACATTGTTACAACGGGTG 159490 ||||| ||||| | |||||| ||| |||||| |||||| || |||||||| | || || Sbjct 6476206 AACTTAGGAATCAACTTTTCAGGAAACTGGTTAGGACCATAAACATTGTTCCCGCGAGTC 6476147 Query 159491 ATGATTACGGGAAGAGAGAAGGAGAGACGATAAGAACTGGCCAAGAGTTCTGCTCCTGCC 159550 | ||||| || | | | || || ||| | | | | | || ||||| ||| Sbjct 6476146 GTTATTACTGGTAACCCGTATGATCTACCATATGCCATCACAAGCATCTCAGCTCCAGCC 6476087 Query 159551 TTGCTGGCCGCATAAGGGTTAGTGGGCATGAAGATGGAATC-----GATA-CTAACG--- 159601 || | || | || |||||||| || | || ||| | ||| | ||| Sbjct 6476086 TTAGTAGCAGAGTACGGGTTAGTAGGAAGCAACTGAGAAGCCTCGTGATTTCCAACAGAA 6476027 Query 159602 ------TCATCGTTCTCTCCCTTAACCTCATCTGTAGAGACGTGAATGAACCTCTTTAC- 159654 ||||| ||||||| | |||||||| ||| ||| || || |||||| | | Sbjct 6476026 GCATCCTCATCAGTCTCTCCATAGACCTCATCAGTACTGACATGGATAAACCTCCTGATC 6475967 Query 159655 -GGAAAATTCTTTAGCACAG--TGGAGTAGGTTATGTGTGCCTACCACATTATTCATGGT 159711 || | | || ||| || | ||| || ||| || || | ||| ||| |||| Sbjct 6475966 TGGCCAGTGACTTTGCA-AGCTTCGAGAAGAACATGAGTACCATAGATATTGTTCTTGGT 6475908 Query 159712 AAAATCTAGAGAGTTATCGAAAGAGTTGTCTACATGAGTGTGAGCAGCAAAGTGCATAAC 159771 ||| || | |||| ||||||||||||| |||||||| ||||||||||||||||||| Sbjct 6475907 AAACTCAAAGCTGTTACCGAAAGAGTTGTCAACATGAGTTTGAGCAGCAAAGTGCATAAT 6475848 Query 159772 CGTGTCGATCTTCT 159785 |||||||| |||| Sbjct 6475847 GGTGTCGAT-TTCT 6475835 >seq19 Length=26736940 Score = 84.2 bits (92), Expect = 8e-11 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 159700 ATTATTCATGGTAAAATCTAGAGAGTTATCGAAAGAGTTGTCTACATGAGTGTGAGCAGC 159759 ||| ||| ||||||| || | ||| ||||||||||||| |||||||| |||||||| Sbjct 7122044 ATTGTTCTTGGTAAACTCAAAGCTATTACCGAAAGAGTTGTCAACATGAGTTTGAGCAGC 7121985 Query 159760 AAAGTGCATAACCGTGTCGATCTTCT 159785 ||||||||||| |||||||| |||| Sbjct 7121984 AAAGTGCATAATGGTGTCGAT-TTCT 7121960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1883987726218316