Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq2559 201 2e-49 >seq2559 Length=1683 Score = 201 bits (222), Expect = 2e-49 Identities = 251/336 (75%), Gaps = 11/336 (3%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGA- 62 ||||| ||||| |||||||||||| |||| ||| | ||||||| | | |||||| | Sbjct 544 CCCGACGAGGGGAGTGAAATAGACC-TGAAACCGGACACCTACAAACAGATGGAGCCCAA 602 Query 63 GTGA--TTC--GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCA 118 | | ||| |||||| ||| ||||||| || ||| ||| ||| ||| | | || | Sbjct 603 GATACGTTCTGGGTGACATCGTACCTTTTGTATTATGGGCCAGCGACTTAATT-TAACGA 661 Query 119 GCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG 178 || || |||| | ||| ||| || || ||||||||| ||||| |||||| | Sbjct 662 GCAAGCTTAAACCGAT-AGGTG---TAGGCGTAGCGAAAGCGAGTCTTAATAGGGCGCCA 717 Query 179 AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGT 238 |||| || | ||||| |||||||| |||||||| ||| ||||||||||||| | ||| Sbjct 718 AGTTCGTTGTATTAGACCCGAAACCTAGTGATCTAGCCATGAGCAGGTTGAAGGTGAGGT 777 Query 239 AACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTA 298 ||| | ||||||||||||| ||| |||||||| || ||||||| | || || Sbjct 778 AACACTCACTGGAGGACCGAACGGGTGTCTGTTGAAAAAGACTCCGATGACTTGTGGTTA 837 Query 299 GGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||||||||||||||||||| || Sbjct 838 GGGGTGAAAGGCCAATCAAACTGGGAAATAGCTGGT 873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972720366592