Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq3936 143 4e-32 seq285 73.4 6e-11 >seq3936 Length=1219 Score = 143 bits (158), Expect = 4e-32 Identities = 86/89 (97%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 135 CCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAA 194 |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1097 CCAAGGTGTGA-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAA 1155 Query 195 GGGCATCACAGACCTGTTATTGCCTCaaa 223 ||||||||||||||||||||||||||||| Sbjct 1156 GGGCATCACAGACCTGTTATTGCCTCAAA 1184 >seq285 Length=990264 Score = 73.4 bits (80), Expect = 6e-11 Identities = 61/72 (85%), Gaps = 2/72 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| | || | ||||||| ||||| |||| ||||| ||||| |||||||||| ||| Sbjct 185945 GTACAAAAGACATGAACGTAGTTAACGCAAGCT-GATGATTCGCGTTTACTAGGAA-TTC 185888 Query 61 CTCGTTGAAGAC 72 ||||||||| || Sbjct 185887 CTCGTTGAAAAC 185876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751940364990