Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq3936 116 6e-24 seq27 100 5e-19 >seq3936 Length=1219 Score = 116 bits (128), Expect = 6e-24 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1108 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1167 Query 62 CCTGTTATTGCCTCAAA 78 ||||||||||||||||| Sbjct 1168 CCTGTTATTGCCTCAAA 1184 >seq27 Length=598669 Score = 100 bits (110), Expect = 5e-19 Identities = 60/63 (95%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 183 CAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAA 242 |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 550563 CAGACAAATCGCTCCACCAACTAAGAACGATCATGCACCACCACCCATAGAATCAAGAAA 550504 Query 243 GAG 245 ||| Sbjct 550503 GAG 550501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796736812266