Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq126 91.5 3e-16 seq161 78.8 2e-12 >seq126 Length=830300 Score = 91.5 bits (100), Expect = 3e-16 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 48 CAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGT 107 ||| ||||||| ||||| || |||||||||||||||||||||||||||||||| |||| Sbjct 333865 CAGACTTTCGCACATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGT 333806 Query 108 GTCTCAGT 115 |||||||| Sbjct 333805 GTCTCAGT 333798 >seq161 Length=784643 Score = 78.8 bits (86), Expect = 2e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 96 AGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGA 153 ||||||| |||||||||||| |||||||| |||||||||||||| |||||| ||| || Sbjct 152410 AGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGA 152353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071912246080