Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq2559 297 7e-78 >seq2559 Length=1683 Score = 297 bits (328), Expect = 7e-78 Identities = 399/549 (73%), Gaps = 11/549 (2%) Strand=Plus/Minus Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGG-CCCCCTAGACCATCCAGTGCT 111 || |||||||||||||||| || |||||| || | |||||||| |||||||||||| Sbjct 985 GGTATTCGGAGTTTGGTTGGGTTTGGTAAGACGGTAAGTCCCCCTAGCCCATCCAGTGCT 926 Query 112 CTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTA 171 ||||| || | | || ||| || |||||||| ||||| ||||||||||||| Sbjct 925 CTACCCCCTGAGGTATTCATCCGAGGCGATACCTAAATATCTTTCGCGGAGAACCAGCTA 866 Query 172 TCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCT 231 | | |||||||||||||||||||||||| ||||| |||||| |||||||| Sbjct 865 TTTCCCAGTTTGATTGGCCTTTCACCCCTAACCACAAGTCATCGGAGTCTTTTTCAACAG 806 Query 232 AAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCA 291 | ||||||||||||| || ||||| ||||||||||| ||||| ||||||| Sbjct 805 ACACCCGTTCGGTCCTCCAGTGAGTGTTACCTCACCTTCAACCTGCTCATGGCTAGATCA 746 Query 292 CTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACG 351 || | ||||||||| | ||| ||||||||| ||||||||||||||||| Sbjct 745 CTAGGTTTCGGGTCTAATACAACGAACTTGG-CGCCCTATTAAGACTCGCTTTCGCTACG 687 Query 352 GCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAA 411 |||| || ||| |||| || || || || |||| ||| ||| | ||||| Sbjct 686 CCTACACCTATCGGTTTAAGCTTGCTCGTTAAATTAAG-TCGCTGGCCCATAATACAAAA 628 Query 412 GGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGG 471 || ||| |||||| | || || ||| ||||| | | ||||||| || Sbjct 627 GGTACGATGTCACCCAGAACGTAT------CTTGGGCTCCATCTGTTTGTAGGTGTCCGG 574 Query 472 TTTCAGGTACTATTTCACTCCCCGCCA-GGGGTACTTTTCACCTTTCCCTCACGGTACTT 530 |||||||| |||||||||||||| | ||||| ||||||||||||||||||||||||| Sbjct 573 TTTCAGGT-CTATTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTCCCTCACGGTACTG 515 Query 531 GTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590 || | ||||||||| ||||||| |||||||| |||||||||| ||| |||| || Sbjct 514 GTTCACTATCGGTCGATGAGGAGTACTTAGGCTTGGAGGGTGGTCCCCCCATGTTCAGAC 455 Query 591 GAAATTTCA 599 |||||| Sbjct 454 AGGATTTCA 446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817451211264