Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq2559 324 3e-86 >seq2559 Length=1683 Score = 324 bits (358), Expect = 3e-86 Identities = 320/399 (80%), Gaps = 15/399 (4%) Strand=Plus/Minus Query 28 CTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGC 87 |||||||||| | | ||||||||||||||| ||| |||||| ||||| |||||||| Sbjct 817 CTTTTTCAACAGACACCCGTTCGGTCCTCCAGTGAGT-GTTACCTCACCTT-CAACCTGC 760 Query 88 CCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGA-CTAGACGCCCTAGTAA 146 ||| || |||||| | ||||| |||||||| | | | ||| || | ||||||| ||| Sbjct 759 TCAT-GGCTAGATCACTAGGTTT-CGGGTCTAATAC--AACGAACTTGGCGCCCTATTAA 704 Query 147 GACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCG 205 |||||||||| |||||||||| | ||||| | |||||||| || | ||| ||||||| Sbjct 703 GACTCGCTTT-CGCTACGCCTACACCTATCGGTTTAAGCTT-GCTCGTTAAATTAAGTCG 646 Query 206 CTGACCCATTATACAAAAGGTACGCAGTCACCCA--ACAAAG--TGGGCTCCCACTGCTT 261 ||| ||||| |||||||||||||| |||||||| || | |||||||| ||| || Sbjct 645 CTGGCCCATAATACAAAAGGTACGATGTCACCCAGAACGTATCTTGGGCTCCATCTGTTT 586 Query 262 GTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCC 321 ||| | | |||||||||| ||||||||||||||||| |||||| |||||| ||||||| Sbjct 585 GTAGGTGTCCGGTTTCAGG-TCTATTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTCC 527 Query 322 CTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCC 381 ||||||||||| |||||||||||||| | || |||| |||| |||||||| |||||||| Sbjct 526 CTCACGGTACTGGTTCACTATCGGTCGATGAGGAGTACTTAGGCTTGGAGGGTGGTCCCC 467 Query 382 CCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||| |||||||| |||| |||| ||| | |||||| Sbjct 466 CCATGTTCAGACAGGATTTCACGTGTCCCGCCTTACTCG 428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241498362624