Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq2559 210 5e-52 seq7616 149 1e-33 seq267 131 4e-28 >seq2559 Length=1683 Score = 210 bits (232), Expect = 5e-52 Identities = 300/415 (72%), Gaps = 18/415 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| ||| || |||| | | ||| ||||| || Sbjct 1446 CGACTACGCCTTTCGGCCTCGCCTTAGGGACCGGCTAACCCTGCGAAGATTAACTTTACG 1387 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCC-GTCACACGCTACTCATGCCT 119 | |||||||||||| |||||| | | | ||| | || || |||||||||| Sbjct 1386 CAGGAACCCTTGGACTTTCGGCGACAGTGTCTTTCACACTGTTTGTCGTTACTCATGCCA 1327 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA--CTGACA 176 |||||| |||| | || | ||||| | | |||| | | | | || || ||| Sbjct 1326 GCATTCGCACTTCTGAT-ACCTCCAGG-CGCTCTCACGAGTCGCCCTTCGCAGGCTTACA 1269 Query 177 CGACGCTCCCCTACCCAACCACACA---GGTTGCCAC----AGCTTCGGCGGATAACTTA 229 ||||||| ||||| || | || | ||| ||||||||| | ||| Sbjct 1268 GAACGCTCCGCTACCGCGTGACCCTTGCGGATCACACCCTAAGCTTCGGCTCGTGGCTTG 1209 Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATTACGCACTC 284 ||||||| ||||| ||||||| | | | ||| |||||||||||| |||||| || Sbjct 1208 AGCCCCGTTACATCTTCGGCGCAGGAACCCTTATTTAGACCAGTGAGCTGTTACGCTTTC 1149 Query 285 TTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTT 344 ||| ||||||||||||||| ||||||||||||||||||| | | | ||||||||||| Sbjct 1148 TTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTTTTGGGATTCCCACATCCTTT 1089 Query 345 CCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTC 399 |||||| || ||| | |||||||||||||||| | || ||| |||||||||||| Sbjct 1088 CCCACTTAGCCACGAATTAGGGGCCTTAGCTGTAGGTCCGGGTTGTTTCCCTCTC 1034 >seq7616 Length=1924 Score = 149 bits (164), Expect = 1e-33 Identities = 116/137 (85%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 264 CCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCT-GGTTG 322 ||||||||||||||||||||||||||||| |||||||||| | || |||||| | || || Sbjct 1364 CCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCTTTGGCTG 1305 Query 323 TCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATC 382 ||| ||| | | || |||||| ||||||| ||| |||||||||||||||| ||||| Sbjct 1304 TCTCTGCACCCCTACCTCCTTTATCACTGAGCGGCCATTTAGGGGCCTTAGCTGGTGATC 1245 Query 383 TGGGCTGTTTCCCTCTC 399 |||||||||||||||| Sbjct 1244 CGGGCTGTTTCCCTCTC 1228 >seq267 Length=1500311 Score = 131 bits (144), Expect = 4e-28 Identities = 277/409 (68%), Gaps = 41/409 (10%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||| |||| | ||||| |||| | | ||||||||| | ||| ||| | | Sbjct 85147 CGACTATGCCTTTTGGCCTGCTCTTACGCCTTGACTCACCCTCCGTGGACGAACCTTGCG 85206 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||||| | | || | | |||||| |||| | || |||||| || Sbjct 85207 GAGGAACCCTTGGGTTTTTGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCTG 85266 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || ||||| | |||| ||| |||| || || | | Sbjct 85267 ACATTCTCGCTTCCGCTTCG--TCCACAGCTGC-TCACGCGGTTACTTCCCC-CTAAGGC 85322 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | |||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 85323 GGAACGCTCCCCTACTGATGCATTTTGACA---TCCCACAGCTTCGGCAGATCGCTTA-G 85378 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 |||| | ||| ||||||| | | || || |||||||||||||||||||||||||| Sbjct 85379 CCCCATT-CATCTTCGGCGCAAGAGCGCTCGATTAGTGAGCTATTACGCACTCTTTCAAG 85437 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||| ||||| Sbjct 85438 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGT-----------------------CACTG 85474 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||| ||| ||||||||||||||||||||||| Sbjct 85475 AGCGGTCATTTAGGGGCCTTAACTGGTGATCTGGGCTGTTTCCCTCTCG 85523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177503601664