Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq373 91.5 2e-16 seq534 87.8 3e-15 >seq373 Length=286203 Score = 91.5 bits (100), Expect = 2e-16 Identities = 138/195 (71%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 100 GGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCC 159 |||| ||||| | ||||||| || || || ||||| ||||| ||||| || || | Sbjct 78674 GGAAAGCTTCAT-GTGGAATATCAACAGAACCAACTCGTTTCATACGTTTCTTTCCTTCT 78616 Query 160 TTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGT 219 || || |||||||| ||||| ||| || ||| ||| || || || ||||| || || Sbjct 78615 TTCTGTTTCTCAAGAAGCTTCTTCTTTCGAGTTATGTCTCCTCCATAACATTTTGCAAGC 78556 Query 220 ACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCC 279 ||||||||||| | |||| || | | | |||||||||| ||||| ||||| Sbjct 78555 ACGTTCTTTCTCATAGCCGAGATTGTGTCTCTTGCAATGATCTTTGAACCAATAGCGGCT 78496 Query 280 TGGATCGCGACGTCG 294 || ||| ||| ||| Sbjct 78495 TGTATCATGACTTCG 78481 >seq534 Length=640355 Score = 87.8 bits (96), Expect = 3e-15 Identities = 136/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 102 AAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCCTT 161 || ||||| | ||||||| || || || ||||| ||||| ||||| || || | || Sbjct 565478 AAAGCTTCAT-GTGGAATATCAACAGAACCAACTCGTTTCATACGTTTCTTTCCTTCTTT 565536 Query 162 TTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTAC 221 || |||||||| ||||| ||| || ||| ||| || ||||| ||||| || || || Sbjct 565537 CTGTTTCTCAAGAAGCTTCTTCTTTCGAGTTATGTCTCCTCCGTAACATTTTGCAAGCAC 565596 Query 222 GTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCCTG 281 ||||||||| | ||| || | | | |||||||||| ||||| ||||| || Sbjct 565597 GTTCTTTCTCATCGCCGAGATTGTGTCTCTTGCAATGATCTTTGAACCAATAGCGGCTTG 565656 Query 282 GATCGCGACGTCG 294 ||| ||| ||| Sbjct 565657 TATCATGACTTCG 565669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 838331368576