Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq2559 291 3e-76 seq267 82.4 3e-13 seq7616 77.0 1e-11 >seq2559 Length=1683 Score = 291 bits (322), Expect = 3e-76 Identities = 360/482 (75%), Gaps = 14/482 (3%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAG--TCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| || |||||| || ||| || | ||||||||||||| ||||||||| ||| Sbjct 698 CGAGTCTTAATAGGGCGCCAAGTTCGTTGTAT-TAGACCCGAAACCTAGTGATCTAGCCA 756 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || |||| |||||||| |||||||| | ||||||| |||||| |||||||||| Sbjct 757 TGAGCAGGTTGAAGGTGAGGTAACACTCACTGGAGGACCGAACGGGTGTCTGTTGAAAAA 816 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 ||||| ||||| |||||||||||||| || |||||| |||||||||||||||| Sbjct 817 GACTCCGATGACTTGTGGTTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTGGTTCT 876 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTC--AAGTATCACCATCGGGGGTAGAGCACTGTTA 237 | ||||| |||||||||| ||||| | | || ||| ||||||||||||||| Sbjct 877 CCGCGAAAGATATTTAGGTATCGCCTCGGATGAAT-ACCTCAGGGGGTAGAGCACTGGAT 935 Query 238 TGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTT 297 |||||||||| | | || ||||||||||| |||||||||||| | ||| | Sbjct 936 GGGCTAGGGGGACTTACCGTCTTACCAAACCCAACCAAACTCCGAATACCTGAGAGTACT 995 Query 298 ACCGCGGGAGT--GAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGA 355 | | ||||||| | ||| ||||||||| |||||| |||||| || || ||||| Sbjct 996 ATC-CGGGAGTCACACGGC--GGGTGCTAACGTCCGTCGTGGAGAGGGAAACAACCCGGA 1052 Query 356 CTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGA 415 | ||||||||||||| || | ||||||| | || || || || | | || | Sbjct 1053 CCTACAGCTAAGGCCCCTAATTCGTGGCTAAGTGGGA--AAGGATGTGGGAATCCCAAAA 1110 Query 416 CAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAG 475 || | |||| |||||||| |||||||||| || |||||||| ||||||||||||||| | Sbjct 1111 CAACCAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAGAAAGCGTAACAGCTCACTGG 1169 Query 476 TC 477 || Sbjct 1170 TC 1171 >seq267 Length=1500311 Score = 82.4 bits (90), Expect = 3e-13 Identities = 110/147 (75%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 414 GACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473 |||||| |||| ||| || | |||||||||| | || ||||||||||||| |||||||| Sbjct 85470 GACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCC-TTGAAAGAGTGCGTAATAGCTCACT 85412 Query 474 AGTCGAGGAGTCGGGCGTGGATAAT-AATCGGGTATTAAGTTGTCTACCGAAGCAGTGGG 532 | ||||| || ||| || || ||| ||| |||| ||| ||||||| ||||| Sbjct 85411 AATCGAGCGCTCTTGCGCCGAAGATGAATGGGG--CTAAGCGATCTGCCGAAGCTGTGGG 85354 Query 533 ATCATTTATATG-ATCGGTAGGGGAGC 558 || | | ||| ||| |||||||||| Sbjct 85353 AT-GTCAAAATGCATCAGTAGGGGAGC 85328 >seq7616 Length=1924 Score = 77.0 bits (84), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396 |||||| || | ||||| | ||||||||||||| ||||| | ||| ||| | | || Sbjct 1228 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGGCCGCTCAGTGATA--AA 1285 Query 397 CGAAGTCTGATTGCTAAGACAG-CTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455 || || | ||| |||||| | | || ||| || | |||||||||| | || |||| Sbjct 1286 GGAGGTAGGGGTGCAGAGACAGCCAAAGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAG 1344 Query 456 AGTGCGTAACAGCTCACT 473 ||||||||| |||||||| Sbjct 1345 AGTGCGTAATAGCTCACT 1362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689461689344