Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq2559 111 3e-22 >seq2559 Length=1683 Score = 111 bits (122), Expect = 3e-22 Identities = 90/108 (83%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 |||||||||||||||||| | |||||| ||||||||| || |||||||||||| ||| Sbjct 31 GGTGGATGCCTTGGCGATGAGAGGCGACGAAGGACGTGCTACGCTGCGATAAGCTGTGGG 90 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 ||| || || ||||||||| ||||||||||||||||||||||| Sbjct 91 GAG-CTGCGAAGGAGCTTTGATCCACAGATTTCCGAATGGGGAAACCC 137 Score = 102 bits (112), Expect = 1e-19 Identities = 138/187 (74%), Gaps = 13/187 (7%) Strand=Plus/Plus Query 139 CTGAATACATAGGTA-TGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGG 197 ||||||||||||| | |||| ||| | | ||||||||||||||||||| ||| ||| Sbjct 225 CTGAATACATAGGAGGTTTTAAGCAAACCCAGGGAACTGAAACATCTAAGTACCTGGAGG 284 Query 198 AAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCTTTACGA 257 ||| || ||||||||||| ||| |||||||||||||||| ||| || | | Sbjct 285 AAAGGACATCAACCGAGACTCCGCTAGTAGTGGCGAGCGAACGCGGACCAG-----GCCA 339 Query 258 GATAGTTGAAT-TGA---TAGTGGAATC-CTCTGGAAATAGGAGCCATAGCGGGTGATAG 312 | | | ||| ||| | ||||||| || ||||| ||||| ||| ||||||||| Sbjct 340 GTCA--TCAATGTGAGACAATTGGAATCTGTCAGGAAAGCAGAGCCTTAGAGGGTGATAG 397 Query 313 CCCCGTA 319 ||||||| Sbjct 398 CCCCGTA 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918324819776