Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq279 156 3e-33 >seq279 Length=1218690 Score = 156 bits (172), Expect = 3e-33 Identities = 367/548 (67%), Gaps = 12/548 (2%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| ||||||||||| | || || || ||| | || ||||| Sbjct 624590 ATGTACAAGAAAGCCGAAGCATCCTTCTGGACCGCCGAAGAAGTAGATCTATCACAAGAC 624649 Query 61156 ATGAATGACTGGGAGC---GTTT-ATCGAGCGGTGAACAACATTTCATTAAACATGTGTT 61211 | || |||||| || | | ||| ||| |||| || ||||| ||||| || | Sbjct 624650 AACCGCGATTGGGAGAACAGTCTCAACGA-CGGCGAACGTCACTTCATCAAACACGTCCT 624708 Query 61212 GGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCA 61271 || ||||| || || || ||||||||||| |||||| | || ||| | Sbjct 624709 CGCTTTCTTCGCTGCCTCCGACGGTATCGTTCTAGAGAATCTCGCATCTCGGTTCATGTC 624768 Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331 || || ||||| |||||||||||| ||||||||| |||||||| || || |||||| | Sbjct 624769 CGATGTCCAAGTCTCGGAGGCGCGTGCTTTCTACGGTTTCCAGATCGCGATTGAGAATAT 624828 Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGA 61391 ||||| |||||||| ||| |||| ||||||| ||||||| || || | || Sbjct 624829 ACACTCTGAGATGTATAGTCTTCTTCTCGATACTTACATCAAAGACAACAAAGAGAGAGA 624888 Query 61392 ACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCG--GAAAGCGGATTGGGCC 61449 | | ||| ||| || |||||||| || ||| ||| |||||| | ||||| Sbjct 624889 CCATCTCTTCCGTGCGATTGAGACGATTCC--TTGTGTCGCGAAGAAAGCTCAGTGGGCG 624946 Query 61450 TTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTG 61509 | || |||||| | | | | || || | ||||||| | | || || || Sbjct 624947 ATGAAATGGATCGACGG---ATCTCAGACCTTCGCTGAACGAATCGTTGCTTTCGCTTGC 625003 Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569 || || ||| | || ||| ||| || | ||||| ||| | |||||||| ||| Sbjct 625004 GTTGAAGGTATCTTCTTCTCCGGAAGCTTCTGTTCCATCTTCTGGCTTAAGAAACGAGGA 625063 Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGT 61629 || ||||| || | || ||| || || |||| || || ||||| ||| | || || Sbjct 625064 CTCATGCCTGGGTTAACTTTCTCAAACGAACTGATCTCTCGAGACGAAGGCTTACACTGC 625123 Query 61630 GATTTTGC 61637 || || || Sbjct 625124 GACTTCGC 625131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397528335883040