Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2 379 3e-103 seq34 325 6e-87 seq24 280 2e-73 >seq2 Length=14066726 Score = 379 bits (420), Expect = 3e-103 Identities = 241/256 (94%), Gaps = 8/256 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 5310926 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 5310983 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 5310984 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----AAGATTA 5311039 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 5311040 CCCGGGCCTGTCGGCCAAGGTGTGA-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 5311098 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 5311099 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACG 5311158 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 5311159 GCCATAGTCCCTCTAA 5311174 >seq34 Length=114745 Score = 325 bits (360), Expect = 6e-87 Identities = 201/211 (95%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 46 CTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATG 105 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 37974 CTTACTAGGAATT-CCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATG 37916 Query 106 AAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGT 165 |||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| Sbjct 37915 AAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGTGTGA-ACTCGTTGAATACATCAGT 37857 Query 166 GTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 37856 GTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 37797 Query 226 TCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 ||| ||||||||| |||||| |||||| || Sbjct 37796 TCCTTGGCCTAAACGGCCATAGTCCCTCTAA 37766 >seq24 Length=127602 Score = 280 bits (310), Expect = 2e-73 Identities = 223/259 (86%), Gaps = 23/259 (9%) Strand=Plus/Plus Query 4 CAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTC 63 |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 41360 CAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-CCTC 41417 Query 64 GTTGAAGACCAACAATTGCAATGATCTATC--CCCATCACGATGAAATTTCA----AAGA 117 |||||||||||||||| ||| | || || |||| | | ||| |||| Sbjct 41418 GTTGAAGACCAACAAT------GATTTTTCGTCCGGTCACTAGG-----TCAGGGTAAGA 41466 Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 ||||| || |||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 41467 TTACCGGG-CCTGTCGGCCAAGGTGTGA-ACTCGTTGAATACATCAGTGTAGCGCGCGTG 41524 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAA 237 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 41525 CGGCCCAGAACATCTAA-GGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAA 41583 Query 238 AAGGCCAT-CTCCCTCGAA 255 | |||||| |||||| || Sbjct 41584 ACGGCCATAGTCCCTCTAA 41602 Score = 149 bits (164), Expect = 9e-34 Identities = 89/91 (98%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 84577 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 84634 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTA 91 ||||||||||||||||||||||||||||||| Sbjct 84635 CTCGTTGAAGACCAACAATTGCAATGATCTA 84665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751994368695