Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq7 154 3e-35 seq6 132 9e-29 seq24 95.1 2e-17 >seq7 Length=17303919 Score = 154 bits (170), Expect = 3e-35 Identities = 151/191 (79%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 15054654 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 15054713 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | || | ||||| |||||| | ||| || |||||||| Sbjct 15054714 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 15054772 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 | | ||| | ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 15054773 TTACAGG-ACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 15054831 Query 251 TGAAGACTAAC 261 ||||| ||| Sbjct 15054832 GAAAGACGAAC 15054842 >seq6 Length=16577294 Score = 132 bits (146), Expect = 9e-29 Identities = 101/118 (86%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 201 AGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAA 260 ||||||||| | ||||| || |||||||||||||||||||||||||| ||||| || Sbjct 11395360 AGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAA 11395419 Query 261 CTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | ||||||||||| || |||||||||||||||||||||| ||||||||||| |||| Sbjct 11395420 CAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTGGGGG 11395476 >seq24 Length=127602 Score = 95.1 bits (104), Expect = 2e-17 Identities = 133/181 (73%), Gaps = 22/181 (12%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| || |||||||| |||||||| |||| |||| | |||||||||||| Sbjct 42171 CTGTTACTTTGAAGAA-TTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 42113 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | | ||||| || || | | ||| |||||||| Sbjct 42112 GGGATAACATCATAGGATTTC--GATCTATC-----GGCTTGTCCGGCCGA-GTAATGAT 42061 Query 191 TAATAG-----GGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 ||| || ||| ||||||||| ||||| | ||||||||||||||||||||| Sbjct 42060 TAACAGAACAGGGACAGTCGGGGGC------ATTCA-TAGTCAGAGGTGAAATTCTTGGA 42008 Query 246 T 246 | Sbjct 42007 T 42007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915192925504