Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq7 87.8 3e-15 >seq7 Length=17303919 Score = 87.8 bits (96), Expect = 3e-15 Identities = 137/195 (70%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 100 GGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCC 159 |||| ||||| | ||||||| || || || ||||| ||||| ||||| || || | Sbjct 16352531 GGAAAGCTTCAT-GTGGAATATCAACAGAACCAACTCGTTTCATACGTTTCTTTCCTTCT 16352473 Query 160 TTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGT 219 || || |||||||| ||||| ||| || ||| ||| || ||||| ||||| || || Sbjct 16352472 TTCTGTTTCTCAAGAAGCTTCTTCTTTCGAGTTATGTCTCCTCCGTAACATTTTGCAAGC 16352413 Query 220 ACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCC 279 ||||||||||| | || || | | | |||||||||| ||||| ||||| Sbjct 16352412 ACGTTCTTTCTCATCGCTGAGATTGTGTCTCTTGCAATGATCTTTGAACCAATAGCGGCT 16352353 Query 280 TGGATCGCGACGTCG 294 || ||| ||| ||| Sbjct 16352352 TGTATCATGACTTCG 16352338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 838393519168