Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2 300 3e-79 seq34 257 3e-66 seq24 241 2e-61 >seq2 Length=14066726 Score = 300 bits (332), Expect = 3e-79 Identities = 221/255 (87%), Gaps = 7/255 (3%) Strand=Plus/Minus Query 75 CTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATG 133 |||||||||||||| | | | || | | ||||||||||||||||||||||||||||||| Sbjct 5311175 CTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATG 5311116 Query 134 CCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCT 193 ||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||| Sbjct 5311115 CCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTCA-CACCT 5311057 Query 194 TGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAA 253 |||||| ||| | |||||||||| || | ||||| |||||||||| |||||||| Sbjct 5311056 TGGCCGACAGGCCCGGGTAATCTTATTTCA-----TCGTGATGGGGATAGATCATTGCAA 5311002 Query 254 TTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACG 313 || ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||| Sbjct 5311001 TTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACG 5310942 Query 314 TCCCTGCCCTTTGTA 328 ||||||||||||||| Sbjct 5310941 TCCCTGCCCTTTGTA 5310927 >seq34 Length=114745 Score = 257 bits (284), Expect = 3e-66 Identities = 223/273 (82%), Gaps = 13/273 (5%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | ||| | || ||| |||||| Sbjct 37708 GAACGAGACCTCAGCCTGCTAACTAGCTACGTGGAGGCATCCCTTCACGG----CCGGCT 37763 Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||||||| | | | || | | |||||||||||||||||||||||||||||| Sbjct 37764 TCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGAT 37823 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| Sbjct 37824 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTCA-CACC 37882 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||||| Sbjct 37883 TTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 37941 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 ||| ||| ||||||||||||||| ||||||||| Sbjct 37942 ATTGTTGGTCTTCAACGAGGAATTCCTAGTAAG 37974 >seq24 Length=127602 Score = 241 bits (266), Expect = 2e-61 Identities = 217/266 (82%), Gaps = 20/266 (8%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 |||||||||||||||||||||| | | | || | | ||||||||||||||||||||||| Sbjct 41611 GCCGGCTTCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGT 41552 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 |||||||||| |||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 41551 CTGTGATGCC-TTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTT 41493 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG---TCGTG--CTGGGGA 240 || ||||||||||| ||| | ||||||||| || ||| | ||| | | || Sbjct 41492 CA-CACCTTGGCCGACAGG-CCCGGTAATCTT-----ACCCTGACCTAGTGACCGGACGA 41440 Query 241 TAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCA 300 | | ||||| ||| ||||||||||||||| ||||||||||||| ||||||||| Sbjct 41439 AAAATCATTG------TTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCT 41386 Query 301 CGCGTTGATTACGTCCCTGCCCTTTG 326 |||||||| ||||||||||||||||| Sbjct 41385 CGCGTTGACTACGTCCCTGCCCTTTG 41360 Score = 127 bits (140), Expect = 4e-27 Identities = 81/88 (92%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 241 TAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCA 300 |||| |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| Sbjct 84665 TAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCT 84606 Query 301 CGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||||| ||||||||||||||||||| Sbjct 84605 CGCGTTGACTACGTCCCTGCCCTTTGTA 84578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947192678144